Factsheet for VIT_13s0067g00570.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069903	Potato	cytosol, nucleus, plastid	21.28	72.5
PGSC0003DMT400059907	Potato	plastid	21.83	68.0
KRG97756	Soybean	nucleus	72.29	65.56
KRH31123	Soybean	nucleus	70.09	61.71
VIT_08s0007g02160.t01	Wine grape	nucleus	60.18	59.85
PGSC0003DMT400069902	Potato	cytosol	17.43	59.75
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	55.05	58.94
PGSC0003DMT400031157	Potato	nucleus	16.51	58.06
Solyc03g096090.2.1	Tomato	plastid	51.56	57.82
Bra004992.1-P	Field mustard	nucleus	62.02	57.39
AT2G40070.1	Thale cress	nucleus	63.85	57.33
CDX74811	Canola	nucleus	61.28	56.8
CDY07628	Canola	nucleus	63.3	56.65
CDY60338	Canola	nucleus	63.3	56.56
Bra000164.1-P	Field mustard	nucleus	63.12	56.49
CDY20509	Canola	cytosol	61.47	55.74
GSMUA_Achr8P02330_001	Banana	cytosol	60.18	54.85
GSMUA_Achr10P...	Banana	nucleus	55.78	54.0
KRH14961	Soybean	nucleus	63.12	51.5
Os01t0141900-01	Rice	nucleus	57.25	51.49
EES02509	Sorghum	nucleus	55.6	50.5
Zm00001d039901_P003	Maize	nucleus	55.6	50.5
KRH73177	Soybean	nucleus	62.02	48.84
PGSC0003DMT400031154	Potato	nucleus	37.43	48.69
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	51.93	46.32
TraesCS3B01G067400.1	Wheat	nucleus	52.29	45.09
TraesCS3D01G054400.1	Wheat	cytosol	52.11	45.01
TraesCS3A01G055100.2	Wheat	cytosol	51.93	41.19
GSMUA_Achr5P28870_001	Banana	cytosol	50.28	38.76
VIT_08s0056g00640.t01	Wine grape	nucleus	27.34	26.14
VIT_01s0010g02610.t01	Wine grape	nucleus	22.02	10.14

Protein Annotations

EntrezGene:100263846	wikigene:100263846	MapMan:35.2	ProteinID:CBI25498	ProteinID:CBI25498.3	UniProt:D7T4R6
EMBL:FN595514	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005875
EntrezGene:LOC100263846	wikigene:LOC100263846	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	TIGR:TC55915	TIGR:TC66773
UniParc:UPI0001984569	ArrayExpress:VIT_13s0067g00570	EnsemblPlantsGene:VIT_13s0067g00570	EnsemblPlants:VIT_13s0067g00570.t01	unigene:Vvi.11689	RefSeq:XP_002274030
RefSeq:XP_002274030.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:-:310241..315069

Molecular Weight (calculated)

57824.3 Da

IEP (calculated)

11.926

GRAVY (calculated)

-0.721

Length

545 amino acids

Sequence
(BLAST)

001: MNRSFRAQES QMSATVRQRQ QQVGSLRSSV MKEKDEELAL FLEMRKREKE RSHLLLLQDS EEFDAPLGAK PGSSPIFNIA PSPPPRKTVA DDFLNSDNDK
101: NDYDWLLTPP GTPLFPSLEM ESQKTVMSRI GTPKARPTAL KSRLANPQPE PAARSSLVSK HPASSPGLNS SSAGIRRPSS SGGPGSRPAT PTGRPTLTAT
201: TRPSRPATPT SRATLTSTKP TVPARSSTPV TRSTARSSTP TSRPSIPASK PVSRAATPTR RPSTPSSVSN LSAPPIKSTS SVTKSGPATS RNPVPSRGSS
301: PTVKSRPWKP LEMPGYSLDA PPNLRTSAPE RPVSASRGRP SAPIARSSSV DAAPNGRPRR QSCSPARGRP PNGIIHTSGS SVPAVSRGLS KVSDNVSPVL
401: IGTKMVERVI NMRKLVPPKQ EDKHSPRGNL SGKLASSPDS SGFGRTLSKK SLDMAIRHMD IRRSIPGNLR PLMTNIPASS MYSVRSGPTR SRTVSVSDSP
501: LATSSNASSE VSVNNNALCV DGGEIEDDIG SERGGRPSPA SLRGR

Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)

001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.