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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74811 Canola nucleus 92.19 92.35
CDY20509 Canola cytosol 85.4 83.69
AT2G40070.1 Thale cress nucleus 80.98 78.58
Bra000164.1-P Field mustard nucleus 77.25 74.71
PGSC0003DMT400069903 Potato cytosol, nucleus, plastid 17.49 64.38
PGSC0003DMT400059907 Potato plastid 18.68 62.86
VIT_13s0067g00570.t01 Wine grape nucleus 57.39 62.02
KRG97756 Soybean nucleus 61.12 59.9
KRH31123 Soybean nucleus 60.61 57.67
Solyc03g096090.2.1 Tomato plastid 43.97 53.29
PGSC0003DMT400031157 Potato nucleus 13.92 52.9
GSMUA_Achr6P33750_001 Banana cytosol, mitochondrion 43.63 50.49
PGSC0003DMT400069902 Potato cytosol 13.58 50.31
Os01t0141900-01 Rice nucleus 51.61 50.16
Zm00001d039901_P003 Maize nucleus 50.42 49.5
EES02509 Sorghum nucleus 50.42 49.5
GSMUA_Achr8P02330_001 Banana cytosol 48.39 47.66
KRH14961 Soybean nucleus 53.99 47.6
GSMUA_Achr10P... Banana nucleus 45.33 47.42
HORVU3Hr1G010470.4 Barley cytosol, nucleus 48.39 46.64
PGSC0003DMT400031154 Potato nucleus 32.43 45.58
TraesCS3D01G054400.1 Wheat cytosol 48.56 45.32
TraesCS3B01G067400.1 Wheat nucleus 48.56 45.25
KRH73177 Soybean nucleus 52.8 44.94
Bra034046.1-P Field mustard nucleus 37.35 42.72
Bra029739.1-P Field mustard nucleus 38.2 42.53
TraesCS3A01G055100.2 Wheat cytosol 49.07 42.07
Bra028894.1-P Field mustard nucleus 33.79 39.33
GSMUA_Achr5P28870_001 Banana cytosol 42.61 35.5
Bra017135.1-P Field mustard nucleus 17.83 27.49
Bra029708.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 25.47 26.5
Bra001348.1-P Field mustard nucleus 24.28 26.43
Bra032851.1-P Field mustard nucleus 21.73 11.36
Bra010916.1-P Field mustard nucleus 19.52 10.69
Protein Annotations
EnsemblPlants:Bra004992.1EnsemblPlants:Bra004992.1-PEnsemblPlantsGene:Bra004992ncoils:CoilPANTHER:PTHR31949PANTHER:PTHR31949:SF1
SEG:segUniParc:UPI00025472EDUniProt:M4CLA5MapMan:35.2::
Description
AT2G40070 (E=1e-122) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 94255 Blast hits to 49644 proteins in 1573 species: Archae - 225; Bacteria - 11215; Metazoa - 37735; Fungi - 21320; Plants - 3339; Viruses - 2662; Other Eukaryotes - 17759 (source: NCBI BLink).
Coordinates
chrA05:+:2853004..2855488
Molecular Weight (calculated)
62276.6 Da
IEP (calculated)
12.066
GRAVY (calculated)
-0.951
Length
589 amino acids
Sequence
(BLAST)
001: MNRSFRAQES RLLDSAARQR QQLRASMMAE KDEELSLFLE MRRREKEQDS SKPGTSPVFN ISSGAAPARK TGPPDDFLNS EGDKNDYEWL LTPPGTPLFP
101: SLEMESHRTM MNQTGDSKGR PATLTSRLAN SSSEPAARNH LTSRQPPTSS SNGTTRRPSS SGGPGSRPGS AGGPGSRPAT PTGRSSSTLT TTNSKSSRPS
201: TPTSRTTTVS STTRPSLTNS RSTKPTPPMS RSTSSSRLTP TASKPTTRPP GSTARSTTST TATRSAGPSR STTPLSRSTA RSSTPTSSRP TLPPPKTISR
301: SSTPTRRPPS AATTTTSKPS QIKPSSPASK PTPSKTTPAA ASRAPSPTVR SRPWKPSDMP GFSLETPPNL RTTLPERPLS ATRGRPGAPS PRSNSVEPAG
401: GGRPRRQSCS PSRGRAPMYA SGSSVPAVNR GYSKANDNVS PVMMGAKMVE RVINMRKLAP PRSDEKGSPH GNLSAKSSSP DSAGFGRTLS KKSLDMAIRH
501: MDIRRTIPGN LRPLMTNIPA SSMYSVRSGH TRGRPMNVSD SPLATSSNAS SEISVYNNNG VCLEAASEKE DDAGSERGCR SPPASLQGR
Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)
001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR
Arabidopsis Description
At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.