Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55901 | Canola | nucleus | 100.0 | 100.0 |
| AT5G01280.1 | Thale cress | mitochondrion, nucleus | 44.86 | 46.9 |
| Bra029739.1-P | Field mustard | nucleus | 43.68 | 41.78 |
| Bra034046.1-P | Field mustard | nucleus | 41.11 | 40.39 |
| KRH49356 | Soybean | nucleus | 36.56 | 35.92 |
| KRH00210 | Soybean | nucleus | 35.97 | 35.34 |
| VIT_08s0007g02160.t01 | Wine grape | nucleus | 36.76 | 33.94 |
| GSMUA_Achr6P33750_001 | Banana | cytosol, mitochondrion | 33.99 | 33.79 |
| Bra004992.1-P | Field mustard | nucleus | 39.33 | 33.79 |
| Os01t0141900-01 | Rice | nucleus | 39.13 | 32.67 |
| Zm00001d039901_P003 | Maize | nucleus | 38.34 | 32.33 |
| EES02509 | Sorghum | nucleus | 38.14 | 32.17 |
| Bra000164.1-P | Field mustard | nucleus | 38.14 | 31.69 |
| GSMUA_Achr10P... | Banana | nucleus | 34.19 | 30.73 |
| HORVU3Hr1G010470.4 | Barley | cytosol, nucleus | 36.96 | 30.61 |
| TraesCS3B01G067400.1 | Wheat | nucleus | 38.14 | 30.54 |
| GSMUA_Achr8P02330_001 | Banana | cytosol | 35.97 | 30.43 |
| PGSC0003DMT400021880 | Potato | nucleus | 32.02 | 30.28 |
| TraesCS3D01G054400.1 | Wheat | cytosol | 37.75 | 30.27 |
| Solyc09g014490.2.1 | Tomato | nucleus | 31.23 | 29.53 |
| TraesCS3A01G055100.2 | Wheat | cytosol | 38.34 | 28.24 |
| GSMUA_Achr5P28870_001 | Banana | cytosol | 32.81 | 23.48 |
| Bra029708.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 25.69 | 22.97 |
| Bra001348.1-P | Field mustard | nucleus | 24.51 | 22.92 |
| Bra017135.1-P | Field mustard | nucleus | 16.01 | 21.2 |
| Bra010916.1-P | Field mustard | nucleus | 20.95 | 9.85 |
| Bra032851.1-P | Field mustard | nucleus | 20.16 | 9.05 |
Protein Annotations
| EnsemblPlants:Bra028894.1 | EnsemblPlants:Bra028894.1-P | EnsemblPlantsGene:Bra028894 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0005875 | GO:GO:0009506 | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF1 | SEG:seg |
| UniParc:UPI000254362D | UniProt:M4EJC8 | MapMan:35.2 | : | : | : |
Description
AT5G01280 (E=1e-065) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 40332 Blast hits to 19265 proteins in 905 species: Archae - 97; Bacteria - 3595; Metazoa - 17370; Fungi - 8276; Plants - 837; Viruses - 1209; Other Eukaryotes - 8948 (source: NCBI BLink).
Coordinates
chrA02:+:1538904..1541219
Molecular Weight (calculated)
54201.0 Da
IEP (calculated)
11.827
GRAVY (calculated)
-0.859
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTQDRDEEL VLFLEIGRLE KSHQASLLTN FSDHCKSNTT SMSSQQYPPR RTAADNFLYS EDEKSDYDWL VTPPDSPSKS SVNQLDAPDA TLTMALKSRL
101: ESCREEERDR TSSKKQTIGL KRPTSSNSSR STSRPSTPAR RSTTPATRST TPISRVTSKG ARANLTSSST SSVRPTSRPS TPTRRPSSSG TSRATLTSSS
201: TSTVRPTSRP STPPRRPSSS GTSRANLTTA RATTGTATST RSIIRPISAP STKPGSRSST PTRRPPTPTG SLTVSRSKPT KPVCKPAPSP TLRSRPWEPY
301: EMPGFSLEAP SNLRTTLPDR PQTASSRRTT AFGASSSRSS SIERTVARRQ SCSPSRNRAP ISNANRPAGR SKTSNADGEL ISPVAKGAQM VERVVSVRKL
401: APPRLTEKGG SNAGKSSSGA DGVGFGRNLS KSSFDMALRH MDIKQGSMKG NFRQLATNVP AASLYSVRSS GTRRKRPVSS SGSSESSSVN ILCLDGSDDN
501: LSDISH
101: ESCREEERDR TSSKKQTIGL KRPTSSNSSR STSRPSTPAR RSTTPATRST TPISRVTSKG ARANLTSSST SSVRPTSRPS TPTRRPSSSG TSRATLTSSS
201: TSTVRPTSRP STPPRRPSSS GTSRANLTTA RATTGTATST RSIIRPISAP STKPGSRSST PTRRPPTPTG SLTVSRSKPT KPVCKPAPSP TLRSRPWEPY
301: EMPGFSLEAP SNLRTTLPDR PQTASSRRTT AFGASSSRSS SIERTVARRQ SCSPSRNRAP ISNANRPAGR SKTSNADGEL ISPVAKGAQM VERVVSVRKL
401: APPRLTEKGG SNAGKSSSGA DGVGFGRNLS KSSFDMALRH MDIKQGSMKG NFRQLATNVP AASLYSVRSS GTRRKRPVSS SGSSESSSVN ILCLDGSDDN
501: LSDISH
001: MRRCEKRHRP TLLMESDNTS STTAMSSQQY PVRRTAGENL LYSDGEKSDY EWLVTPPGSP SRNVTNHLNA PDDNLMTLIS RLENYSKEES EHQTTSLHSS
101: SSVSGIRRPS SSSSSRSTSR PPTPTRKSKT PAKRPSTPTS RATSTTTRAT LTSSSTTSST RSWSRPSSSS GTGTSRVTLT AARATRPTTS TDQQTTGSAT
201: STRSNNRPMS APNSKPGSRS STPTRRPSTP NGSSTVLRSK PTKPLSKPAL SLEASPIVRS RPWEPYEMPG FSVEAPSNLR TTLPDRPQTA SSSRTRAFDA
301: SSSSRSASTE RDVAKRQSCS PSRSRAPNGN VNGAVPSLRG QRAKTNNDDG RLISHAAKGN QKVEKVVNMR KLATPRLTES GSRRLGGGGG DSSAGKSSSG
401: SGGFGFGRNL SKSSIDMALR HMDVRKGSMA GNFRHSVTKA PATSVYSVRS CRNRPVSSSR SSESSVNILC LDGSDDNLSD MSCS
101: SSVSGIRRPS SSSSSRSTSR PPTPTRKSKT PAKRPSTPTS RATSTTTRAT LTSSSTTSST RSWSRPSSSS GTGTSRVTLT AARATRPTTS TDQQTTGSAT
201: STRSNNRPMS APNSKPGSRS STPTRRPSTP NGSSTVLRSK PTKPLSKPAL SLEASPIVRS RPWEPYEMPG FSVEAPSNLR TTLPDRPQTA SSSRTRAFDA
301: SSSSRSASTE RDVAKRQSCS PSRSRAPNGN VNGAVPSLRG QRAKTNNDDG RLISHAAKGN QKVEKVVNMR KLATPRLTES GSRRLGGGGG DSSAGKSSSG
401: SGGFGFGRNL SKSSIDMALR HMDVRKGSMA GNFRHSVTKA PATSVYSVRS CRNRPVSSSR SSESSVNILC LDGSDDNLSD MSCS
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 /.../e: NCBI BLink). [Source:TAIR;Acc:AT5G01280]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.