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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY07628 Canola nucleus 98.85 98.85
CDY60338 Canola nucleus 98.03 97.87
AT2G40070.1 Thale cress nucleus 79.47 79.74
Bra004992.1-P Field mustard nucleus 74.71 77.25
PGSC0003DMT400069903 Potato cytosol, nucleus, plastid 17.24 65.62
VIT_13s0067g00570.t01 Wine grape nucleus 56.49 63.12
PGSC0003DMT400059907 Potato plastid 17.9 62.29
KRG97756 Soybean nucleus 60.76 61.56
KRH31123 Soybean nucleus 60.26 59.29
Solyc03g096090.2.1 Tomato plastid 43.19 54.12
GSMUA_Achr6P33750_001 Banana cytosol, mitochondrion 44.34 53.05
Os01t0141900-01 Rice nucleus 50.41 50.66
Zm00001d039901_P003 Maize nucleus 48.93 49.67
EES02509 Sorghum nucleus 48.93 49.67
KRH14961 Soybean nucleus 54.02 49.25
GSMUA_Achr10P... Banana nucleus 45.48 49.2
PGSC0003DMT400069902 Potato cytosol 12.81 49.06
GSMUA_Achr8P02330_001 Banana cytosol 47.78 48.66
PGSC0003DMT400031157 Potato nucleus 12.32 48.39
HORVU3Hr1G010470.4 Barley cytosol, nucleus 47.95 47.79
KRH73177 Soybean nucleus 53.37 46.97
TraesCS3D01G054400.1 Wheat cytosol 47.62 45.96
PGSC0003DMT400031154 Potato nucleus 31.36 45.58
TraesCS3B01G067400.1 Wheat nucleus 47.29 45.57
Bra034046.1-P Field mustard nucleus 37.44 44.27
Bra029739.1-P Field mustard nucleus 36.78 42.34
TraesCS3A01G055100.2 Wheat cytosol 47.13 41.78
Bra028894.1-P Field mustard nucleus 31.69 38.14
GSMUA_Achr5P28870_001 Banana cytosol 41.38 35.64
Bra017135.1-P Field mustard nucleus 17.41 27.75
Bra029708.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 24.96 26.86
Bra001348.1-P Field mustard nucleus 23.81 26.8
Bra032851.1-P Field mustard nucleus 19.21 10.38
Bra010916.1-P Field mustard nucleus 17.73 10.04
Protein Annotations
EnsemblPlants:Bra000164.1EnsemblPlants:Bra000164.1-PEnsemblPlantsGene:Bra000164PANTHER:PTHR31949PANTHER:PTHR31949:SF1SEG:seg
UniParc:UPI0002540259UniProt:M4C7I6MapMan:35.2:::
Description
AT2G40070 (E=2e-222) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 94255 Blast hits to 49644 proteins in 1573 species: Archae - 225; Bacteria - 11215; Metazoa - 37735; Fungi - 21320; Plants - 3339; Viruses - 2662; Other Eukaryotes - 17759 (source: NCBI BLink).
Coordinates
chrA03:-:9652707..9655357
Molecular Weight (calculated)
64338.9 Da
IEP (calculated)
11.922
GRAVY (calculated)
-0.898
Length
609 amino acids
Sequence
(BLAST)
001: MNRSFRAQES SSSLLMDSAE RQQRQQLRAS MMAEKDEELS LFLEMRRREK EQDNSLLLNN NPHEFDTPLG SKPGTSPVFN LSSGGGPARK TGPPDDFLNS
101: EGDKNDYEWL LTPPGTPLFP SLEMESHRTM MSQSGDSKGR PASLTSRLAN SSSEPAARNH LTSRQQTSSP GLSSSSGATR RPSSSGGPGS RPATPTGRSS
201: STQTTNSKPS RPSTPTSTRT TVSSTTRPSL THSRSNVSAT TKPASLSRSA SSSRLTPTAS KPTTSTTRSA GSTARSTTTS TGTKSAGPSR STTPLSRSTA
301: RSSTPTSRPT LPPPKTISRS ATPTRRPISS ATTTAKPTIS KGKPSSPVAK PMPTPSKTPA VSRPASPTVG SRPWKPSDMP GFSLETPPNL RTTLPERPLS
401: ATRGRPGAPS PRSASVEPSG PAGGRPRRQS CSPSRGRTPM HASGSSVPAV NRGYSRANDN VSPVLMGTKM VERVVNMRKL APPRSDDKSS PQGNLSAKSS
501: SPDSAGFGRT LSKKSLDMAI RHMDIRRTIP GNLRPLMTNI PASSMYSVRS GHTRGRPMNV SDSPLATSSN ASSEISVYNN NGVCLEASEK EDDAGSERGC
601: RSPSSLQGR
Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)
001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR
Arabidopsis Description
At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.