Factsheet for Solyc03g096090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031154	Potato	nucleus	48.77	56.56
VIT_13s0067g00570.t01	Wine grape	nucleus	57.82	51.56
KRG97756	Soybean	nucleus	55.14	44.59
AT2G40070.1	Thale cress	nucleus	55.56	44.48
CDX74811	Canola	nucleus	53.29	44.05
Bra004992.1-P	Field mustard	nucleus	53.29	43.97
CDY20509	Canola	cytosol	54.32	43.93
Bra000164.1-P	Field mustard	nucleus	54.12	43.19
CDY07628	Canola	nucleus	54.12	43.19
KRH31123	Soybean	nucleus	54.73	42.97
CDY60338	Canola	nucleus	53.5	42.62
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	43.62	41.65
GSMUA_Achr10P...	Banana	nucleus	47.33	40.85
Os01t0141900-01	Rice	nucleus	50.41	40.43
Zm00001d039901_P003	Maize	nucleus	48.97	39.67
EES02509	Sorghum	nucleus	48.97	39.67
KRH14961	Soybean	nucleus	54.12	39.37
GSMUA_Achr8P02330_001	Banana	cytosol	47.94	38.96
KRH73177	Soybean	nucleus	53.7	37.72
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	47.33	37.64
TraesCS3D01G054400.1	Wheat	cytosol	46.71	35.97
TraesCS3B01G067400.1	Wheat	nucleus	46.71	35.92
TraesCS3A01G055100.2	Wheat	cytosol	46.5	32.9
Solyc09g014490.2.1	Tomato	nucleus	36.01	32.71
GSMUA_Achr5P28870_001	Banana	cytosol	41.56	28.57
Solyc06g054690.2.1	Tomato	nucleus	25.51	21.99
PGSC0003DMT400031157	Potato	nucleus	6.17	19.35
Solyc05g014640.2.1	Tomato	nucleus	15.64	6.71

Protein Annotations

EnsemblPlants:Solyc03g096090.2.1	EnsemblPlantsGene:Solyc03g096090.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005875	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	SEG:seg	UniParc:UPI0002767BF2	UniProt:K4BJ31
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:57939490..57946346

Molecular Weight (calculated)

50484.2 Da

IEP (calculated)

12.527

GRAVY (calculated)

-0.677

Length

486 amino acids

Sequence
(BLAST)

001: MSSLMLTMIK RITTEMESRK TMMSQLGTSR AHPTALTSRL TNSLPEATSR SNLASRQLAS SPGLNTSSSS LRRPSSSGGS RPSSSGGSRP STPTGRPTLS
101: SSRSTSTSAS RSTSAAATKA MASTATSRSM STTTTSRPSR SATPTSRATM PSAKSTVPPR SSTPIARSSA RSSTPTSRAS VTGSKSTSRA ATPTRRATSV
201: SSTTNTTVPP VKPVSSPSGT RSATTASRNP AASRASSPTV KPRPWKPSDI PGFSLDAPPN LRTSLPDRPI SATRGRPGAA SVRSSSVEPA SNGRVRRQSC
301: SPARGRPPNG VMHSSGSSVP VPSMSRLHAK AKDNVSPGTV GTKMVERVIN MRKLVPPKQD DKHSPHSNLS AKSSSPDSSG FGRSLSKKSL DMAIRHMDIR
401: QRVSGNLRPL MTNIPASSMY SVRSGPPTRG RTSRSISVPD SPLATSSNAS SEVSVSNNVV CIDGSEIDED ISSDKGARSP ASVRGR

Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)

001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.