CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039901_P003	Maize	nucleus	95.83	95.83
Os01t0141900-01	Rice	nucleus	87.83	86.96
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	80.5	79.05
TraesCS3D01G054400.1	Wheat	cytosol	76.33	72.58
TraesCS3B01G067400.1	Wheat	nucleus	76.33	72.47
TraesCS3A01G055100.2	Wheat	cytosol	72.5	63.32
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	49.17	57.96
PGSC0003DMT400069903	Potato	cytosol, nucleus, plastid	15.33	57.5
VIT_13s0067g00570.t01	Wine grape	nucleus	50.5	55.6
PGSC0003DMT400059907	Potato	plastid	16.0	54.86
GSMUA_Achr8P02330_001	Banana	cytosol	54.67	54.85
VIT_08s0007g02160.t01	Wine grape	nucleus	49.17	53.83
GSMUA_Achr10P...	Banana	nucleus	49.17	52.4
KRG97756	Soybean	nucleus	50.83	50.75
Bra004992.1-P	Field mustard	nucleus	49.5	50.42
CDX74811	Canola	nucleus	49.0	50.0
AT2G40070.1	Thale cress	nucleus	49.67	49.09
Solyc03g096090.2.1	Tomato	plastid	39.67	48.97
Bra000164.1-P	Field mustard	nucleus	49.67	48.93
CDY20509	Canola	cytosol	49.0	48.92
CDY07628	Canola	nucleus	49.5	48.77
CDY60338	Canola	nucleus	49.5	48.69
KRH00210	Soybean	nucleus	41.67	48.54
KRH31123	Soybean	nucleus	50.0	48.47
KRH49356	Soybean	nucleus	41.33	48.16
AT3G09000.1	Thale cress	nucleus	40.33	44.73
Bra034046.1-P	Field mustard	nucleus	38.0	44.27
CDY53090	Canola	nucleus	37.33	43.92
PGSC0003DMT400021880	Potato	nucleus	38.83	43.55
CDY22176	Canola	nucleus	37.33	43.41
KRH14961	Soybean	nucleus	48.0	43.11
Bra029739.1-P	Field mustard	nucleus	37.83	42.91
CDY44674	Canola	nucleus	37.67	42.72
Solyc09g014490.2.1	Tomato	nucleus	37.83	42.43
PGSC0003DMT400031154	Potato	nucleus	29.17	41.77
KRH73177	Soybean	nucleus	48.0	41.62
PGSC0003DMT400031157	Potato	nucleus	10.5	40.65
GSMUA_Achr5P28870_001	Banana	cytosol	45.33	38.47
PGSC0003DMT400069902	Potato	cytosol	10.17	38.36
AT5G01280.1	Thale cress	mitochondrion, nucleus	30.83	38.22
CDY55901	Canola	nucleus	32.17	38.14
Bra028894.1-P	Field mustard	nucleus	32.17	38.14
CDY48118	Canola	nucleus	32.17	38.14
AT2G38160.3	Thale cress	nucleus	20.33	38.12
CDX93325	Canola	nucleus	18.5	33.43
Bra017135.1-P	Field mustard	nucleus	17.67	27.75
CDY18403	Canola	nucleus	17.33	27.23
KXG22223	Sorghum	nucleus	22.67	23.57
EES01661	Sorghum	nucleus	21.33	23.02
OQU78994	Sorghum	nucleus	9.33	9.2
KXG23347	Sorghum	nucleus	18.0	9.17

Protein Annotations

EnsemblPlants:EES02509	EnsemblPlantsGene:SORBI_3003G077500	EntrezGene:8073328	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	ProteinID:EES02509
ProteinID:EES02509.1	RefSeq:XP_002457389.1	SEG:seg	unigene:Sbi.11972	UniParc:UPI0001A84B4B	UniProt:C5XQ53
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:6605242..6609903

Molecular Weight (calculated)

62343.9 Da

IEP (calculated)

11.937

GRAVY (calculated)

-0.710

Length

600 amino acids

Sequence
(BLAST)

001: MQRRVVGMAD GDARGRTLGA VIKEKDEELA LFLEMRRREK ERGAAAAAAA AAADQLLLSG DAVAGDGMLL LDPPPPAEPK PAAYKVAGCG FRRAPGGADD
101: FLNADAGDKN DYDWLLTPPG TPLFPSLEVE SKRSPVSQAG TPKTRQTALK SRLSNHPDPP SRTNLPLRTA SSNSLNSVAT TRRPSSSGGL TTNSSRPSTP
201: TGRAALTASS KGSRPSTPTS RTTVPAKTGA SAPRSSTPTS RSTLPSARST TPSSRAVAPA SRTSAPSGRA SAPASRSSTP TSRSSIPATR STTPSSRPSI
301: PAQSKPTSRA STPTRRPSAP SAQHGNLAAP VRSSSISKPG STMPKGSSPA KTAAPTPSRG SSPTVKSRPW KPSEMPGFSL DAPPNLRTSL PERPTSATRG
401: RPGAPSSRSC SVESGPAGRP RRQSCSPSRG RTLSGSVPSG SSMPAVRRSH LNGGDSVNPV QMGNKMVERV VNMRRLVPPK HDDQRSSLNS LSGKSSNSPD
501: SSGFGRTLSK KSLDMALRHM DIRRSIPNNL RPLMTSIPAS SVHSARSGST RSRPISVSDS PLATSSNASS EPSVNNNLMC LDSIDIDDEL CSDRAGPYGR

Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)

001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.