Factsheet for VIT_08s0007g02160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g00570.t01	Wine grape	nucleus	59.85	60.18
KRH00210	Soybean	nucleus	54.2	57.67
KRH49356	Soybean	nucleus	52.37	55.73
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	48.18	51.87
Zm00001d039901_P003	Maize	nucleus	54.38	49.67
EES02509	Sorghum	nucleus	53.83	49.17
GSMUA_Achr8P02330_001	Banana	cytosol	53.65	49.16
Os01t0141900-01	Rice	nucleus	54.2	49.01
GSMUA_Achr10P...	Banana	nucleus	49.82	48.49
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	51.28	45.99
PGSC0003DMT400021880	Potato	nucleus	44.34	45.42
TraesCS3D01G054400.1	Wheat	cytosol	50.91	44.22
Solyc09g014490.2.1	Tomato	nucleus	43.07	44.11
TraesCS3B01G067400.1	Wheat	nucleus	50.73	43.99
CDY53090	Canola	nucleus	39.78	42.75
Bra034046.1-P	Field mustard	nucleus	39.23	41.75
AT3G09000.1	Thale cress	nucleus	41.06	41.59
Bra029739.1-P	Field mustard	nucleus	40.15	41.59
TraesCS3A01G055100.2	Wheat	cytosol	52.01	41.48
CDY44674	Canola	nucleus	39.96	41.4
CDY22176	Canola	nucleus	37.77	40.12
AT5G01280.1	Thale cress	mitochondrion, nucleus	33.76	38.22
AT2G38160.3	Thale cress	nucleus	22.26	38.12
CDX93325	Canola	nucleus	22.63	37.35
CDY55901	Canola	nucleus	33.94	36.76
Bra028894.1-P	Field mustard	nucleus	33.94	36.76
CDY48118	Canola	nucleus	33.76	36.56
GSMUA_Achr5P28870_001	Banana	cytosol	46.72	36.21
CDY18403	Canola	nucleus	20.62	29.58
Bra017135.1-P	Field mustard	nucleus	20.62	29.58
VIT_08s0056g00640.t01	Wine grape	nucleus	25.55	24.56
VIT_01s0010g02610.t01	Wine grape	nucleus	20.8	9.63

Protein Annotations

EntrezGene:100254532	wikigene:100254532	MapMan:35.2	EMBL:AM479479	ProteinID:CAN77490	ProteinID:CAN77490.1
ProteinID:CCB55498	ProteinID:CCB55498.1	UniProt:F6HKS8	EMBL:FN595991	EntrezGene:LOC100254532	wikigene:LOC100254532
PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	TIGR:TC53569	UniParc:UPI0002108809	ArrayExpress:VIT_08s0007g02160	EnsemblPlantsGene:VIT_08s0007g02160
EnsemblPlants:VIT_08s0007g02160.t01	unigene:Vvi.19482	RefSeq:XP_002279742	RefSeq:XP_002279742.2	RefSeq:XP_010654168.1	SEG:seg

Description

No Description!

Coordinates

chr8:-:16207277..16211188

Molecular Weight (calculated)

57680.4 Da

IEP (calculated)

11.552

GRAVY (calculated)

-0.802

Length

548 amino acids

Sequence
(BLAST)

001: MPVSVLGEQP ERNLRMVMKE KDEELLLFLE MRRREKEKND SLLLESPDAP FGSKPDVSPI SKIVSSMPVR KTGPDEFLDS ENDRTDYDWL LTPPGTPLFP
101: SLEMESQKTV MNQIEVSNAR PATLKSRLPN LQPQPASRSN DAARQPAMSS GLNSSHTGNR RPLSSGGPKS TASRPATPTG RPTLPATSKS SRPSTPTSRA
201: TLPSTKLTAP PVRSSTPTRS TARSSTPTTR PSVTASKSTS RSATPSRRSS TPTPSSATRA SAPPARSSSV AKSGPTAAAP PGRSSSVVKS GPTASKSTVP
301: SRGSSPIVKS RPQKPSEKPG FSLDAPPNLK TSMPERPASA SRGRAGAASG RSTSTEAGSD ARLRRQSCSP SRGRGSLGSS SSNGNSIPAM RRAHSNGSDN
401: VSPVLIGTKM VERVVNMRKL APPKQDDHRS AHPAGKSSSA PDSSGFGRTL SKKSLDMALR HMDIRRSIQG NLRPLMTNIP ASSMYSVRSG PTKSSTASVS
501: GSPLATSSIT SSEPSVNENS HCFYGSEIED DELGSDRGHS SPASRQGG

Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)

001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.