Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017135.1-P | Field mustard | nucleus | 89.01 | 89.01 |
| CDX93325 | Canola | nucleus | 59.69 | 68.67 |
| AT2G38160.3 | Thale cress | nucleus | 38.48 | 45.94 |
| KRH00210 | Soybean | nucleus | 29.32 | 21.75 |
| VIT_08s0007g02160.t01 | Wine grape | nucleus | 29.58 | 20.62 |
| KRH49356 | Soybean | nucleus | 27.75 | 20.58 |
| PGSC0003DMT400021880 | Potato | nucleus | 27.49 | 19.63 |
| GSMUA_Achr6P33750_001 | Banana | cytosol, mitochondrion | 25.65 | 19.25 |
| Solyc09g014490.2.1 | Tomato | nucleus | 26.7 | 19.07 |
| CDY22176 | Canola | nucleus | 25.65 | 18.99 |
| CDY53090 | Canola | nucleus | 25.13 | 18.82 |
| CDY44674 | Canola | nucleus | 25.13 | 18.15 |
| CDY20509 | Canola | cytosol | 27.75 | 17.64 |
| CDY07628 | Canola | nucleus | 28.01 | 17.57 |
| CDY60338 | Canola | nucleus | 28.01 | 17.54 |
| CDX74811 | Canola | nucleus | 26.96 | 17.52 |
| GSMUA_Achr10P... | Banana | nucleus | 25.65 | 17.41 |
| Zm00001d039901_P003 | Maize | nucleus | 27.23 | 17.33 |
| EES02509 | Sorghum | nucleus | 27.23 | 17.33 |
| GSMUA_Achr8P02330_001 | Banana | cytosol | 26.96 | 17.22 |
| Os01t0141900-01 | Rice | nucleus | 26.96 | 17.0 |
| CDY48118 | Canola | nucleus | 21.2 | 16.01 |
| CDY55901 | Canola | nucleus | 21.2 | 16.01 |
| HORVU3Hr1G010470.4 | Barley | cytosol, nucleus | 25.39 | 15.88 |
| TraesCS3D01G054400.1 | Wheat | cytosol | 25.92 | 15.69 |
| TraesCS3B01G067400.1 | Wheat | nucleus | 25.92 | 15.66 |
| TraesCS3A01G055100.2 | Wheat | cytosol | 26.96 | 14.99 |
| CDY00658 | Canola | nucleus | 19.63 | 13.89 |
| CDX73938 | Canola | nucleus | 19.11 | 13.52 |
| GSMUA_Achr5P28870_001 | Banana | cytosol | 24.87 | 13.44 |
| CDY27987 | Canola | nucleus | 18.06 | 11.33 |
| CDY35995 | Canola | nucleus | 17.8 | 11.2 |
| CDY11763 | Canola | nucleus | 13.61 | 4.83 |
| CDX90111 | Canola | nucleus | 12.83 | 4.62 |
| CDY27635 | Canola | nucleus | 12.04 | 4.08 |
| CDX84901 | Canola | mitochondrion, nucleus | 12.04 | 4.04 |
Protein Annotations
| EnsemblPlants:CDY18403 | EnsemblPlantsGene:GSBRNA2T00005393001 | InterPro:A1-4-GlycosylTfrase_dom | PANTHER:PTHR12042 | PANTHER:PTHR12042:SF18 | PFAM:PF04572 |
| ProteinID:CDY18403 | ProteinID:CDY18403.1 | SEG:seg | UniParc:UPI0004EEFB77 | UniPathway:UPA00378 | UniProt:A0A078G1A1 |
| MapMan:50.2.4 | : | : | : | : | : |
Description
BnaA04g21840DBnaA04g21840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1A1]
Coordinates
chrLK032085:+:245042..248258
Molecular Weight (calculated)
42441.5 Da
IEP (calculated)
10.678
GRAVY (calculated)
-0.680
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRREKVQGV SSLSEPGTNS VEETTTESLE STTTRYVHLR RSGIEKFLDS ENNKSDYEWL LAAPETGGEE EAQENSMVKL KQPKAARSTV LKPRVENIMQ
101: EPVTLNVKAF KKITRLDSST AVSKQSNTIA DSKTKSKPSR QTTPTPRTTV SSTRPTNSAC RTSSIKSNPR ASRSSSVGKS VPTAAKSTSL TIREIPARPI
201: SASRGRGYSS GGRSTGRSSK ISDDVNPVLM GTQMVERVVN MRKLPPPKHD DNNMNSGFGR TLSRSSLDMA MRHMFSSLKL LTNYTDIISL NDMTRLRNGI
301: GVQTLDQETK KWKTLNNAVM VFDPYHPLMR EFLHEYAATF NGNKWGYNSP CLVTKFIKRL GHKAEFNLTI LPPDAFLSSE LA
101: EPVTLNVKAF KKITRLDSST AVSKQSNTIA DSKTKSKPSR QTTPTPRTTV SSTRPTNSAC RTSSIKSNPR ASRSSSVGKS VPTAAKSTSL TIREIPARPI
201: SASRGRGYSS GGRSTGRSSK ISDDVNPVLM GTQMVERVVN MRKLPPPKHD DNNMNSGFGR TLSRSSLDMA MRHMFSSLKL LTNYTDIISL NDMTRLRNGI
301: GVQTLDQETK KWKTLNNAVM VFDPYHPLMR EFLHEYAATF NGNKWGYNSP CLVTKFIKRL GHKAEFNLTI LPPDAFLSSE LA
001: MENVVVVRDG DEELSLFLEM RRREKLQGVS SLSQPGANSV EKTSTKSLEL LKTSCVKLRR SSVEKFLDSE NDKSDYEWLL AAPEITLLGG KENSMVKLKE
101: PKAKSTALKQ RVENIPQEPL TRSVKVSKPT PRTVSSKQAN TAAEVKPSIK PSRQATPTSR ATLPSTRLTN SAQKSNSESI TTSIKSNTRA SAFPRSSSVG
201: KSVSSAKCTT PKIPETRARP VSTSRSRVYS SGDRSTGRSK ISNDVNPVLM GTQMVERVVN MRKLPPPKHD DNTTLGFGRT LSRSSLDMAL RHMNIRHSVS
301: KNLRVTVSAS TNSMDKNESS
101: PKAKSTALKQ RVENIPQEPL TRSVKVSKPT PRTVSSKQAN TAAEVKPSIK PSRQATPTSR ATLPSTRLTN SAQKSNSESI TTSIKSNTRA SAFPRSSSVG
201: KSVSSAKCTT PKIPETRARP VSTSRSRVYS SGDRSTGRSK ISNDVNPVLM GTQMVERVVN MRKLPPPKHD DNTTLGFGRT LSRSSLDMAL RHMNIRHSVS
301: KNLRVTVSAS TNSMDKNESS
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.2); Has 972 Blast hits to 731 proteins in 211 species: Archae - 0; Bacteria - 236; Metazoa - 194; Fungi - 201; Plants - 218; Viruses - 32; Other Eukaryotes /.../source: NCBI BLink). [Source:TAIR;Acc:AT2G38160]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.