CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07628	Canola	nucleus	98.03	98.19
Bra000164.1-P	Field mustard	nucleus	97.87	98.03
AT2G40070.1	Thale cress	nucleus	79.67	80.07
CDY20509	Canola	cytosol	75.41	76.54
CDX74811	Canola	nucleus	71.8	74.49
PGSC0003DMT400069903	Potato	cytosol, nucleus, plastid	17.21	65.62
VIT_13s0067g00570.t01	Wine grape	nucleus	56.56	63.3
PGSC0003DMT400059907	Potato	plastid	17.87	62.29
KRG97756	Soybean	nucleus	60.49	61.4
KRH31123	Soybean	nucleus	60.49	59.61
Solyc03g096090.2.1	Tomato	plastid	42.62	53.5
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	44.1	52.85
Os01t0141900-01	Rice	nucleus	50.16	50.49
Zm00001d039901_P003	Maize	nucleus	48.69	49.5
EES02509	Sorghum	nucleus	48.69	49.5
GSMUA_Achr10P...	Banana	nucleus	45.41	49.2
GSMUA_Achr8P02330_001	Banana	cytosol	47.7	48.66
KRH14961	Soybean	nucleus	53.28	48.65
PGSC0003DMT400069902	Potato	cytosol	12.62	48.43
PGSC0003DMT400031157	Potato	nucleus	12.3	48.39
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	47.87	47.79
KRH73177	Soybean	nucleus	52.95	46.68
TraesCS3D01G054400.1	Wheat	cytosol	47.21	45.64
PGSC0003DMT400031154	Potato	nucleus	31.15	45.35
TraesCS3B01G067400.1	Wheat	nucleus	46.89	45.25
CDY53090	Canola	nucleus	36.56	43.73
CDY22176	Canola	nucleus	36.89	43.6
CDY44674	Canola	nucleus	36.56	42.16
TraesCS3A01G055100.2	Wheat	cytosol	46.72	41.48
CDY55901	Canola	nucleus	31.15	37.55
CDY48118	Canola	nucleus	30.66	36.96
CDX93325	Canola	nucleus	19.51	35.84
GSMUA_Achr5P28870_001	Banana	cytosol	41.15	35.5
CDY18403	Canola	nucleus	17.54	28.01
CDY00658	Canola	nucleus	23.61	26.67
CDX73938	Canola	nucleus	23.61	26.67
CDY35995	Canola	nucleus	24.75	24.88
CDY27987	Canola	nucleus	24.59	24.63
CDX90111	Canola	nucleus	18.69	10.74
CDY11763	Canola	nucleus	18.85	10.69
CDY27635	Canola	nucleus	19.18	10.38
CDX84901	Canola	mitochondrion, nucleus	18.69	10.0

Protein Annotations

EnsemblPlants:CDY60338	EnsemblPlantsGene:GSBRNA2T00028504001	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	ProteinID:CDY60338	ProteinID:CDY60338.1
SEG:seg	UniParc:UPI0004EF0EEB	UniProt:A0A078J6Y0	MapMan:35.2	:	:

Description

BnaC03g72310DBnaC03g72310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6Y0]

Coordinates

chrLK033871:-:20960..23931

Molecular Weight (calculated)

64541.2 Da

IEP (calculated)

11.975

GRAVY (calculated)

-0.889

Length

610 amino acids

Sequence
(BLAST)

001: MNRSFRAQES SSSLLLDSAE RQQRQQLRAS MMAEKDEELS LFLEMRRREK EQDNSLLLNN NPHEFDTPLG SKPGTSPVFN LSSGGGPARK TGPPDDFLNS
101: EGDKNDYEWL LTPPGTPLFP SLEMESHRTM MSRSGDSKGR PASLTSRLAN SSSEPAARNH LTSRQPTSSP GLSSSSGATR RPSSSGGPGS RPATPTGRSS
201: STQTTNSKPS RPSTPTSTRT TVSSTTRPSL THSRSTVSAT TKPTSLSRSA SSSRLTPTAS KPTTSTTRSA GLTARSTTTS TGTKSAGPSR ATTPLSRSTA
301: RSSTPTSRPT LPPPKTISRS ATPTRRPISS ATTTAKPTIS QVKPSSPAAK PMPTPSKTPA VSRPASPTVR SRPWKPSDMP GFSLETPPNL RTTLPERPLS
401: ATRGRPGAPS PRSASVEPSG PPGGGRPRRQ SCSPSRGRTP MHASGSSVPA VNRGYSRAND NVSPVLMGTK MVERVVNMRK LAPPRSDDKS SPQGNLSAKS
501: SSPDSAGFGR TLSKKSLDMA IRHMDIRRTI PGNLRPLMTN IPASSMYSVR SGHTRGRPMN VSDSPLATSS NASSEISVYN NNGVCLEASE KEDDAGSERG
601: CRSPSSLQGR

Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)

001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.