Factsheet for Zm00001d039901_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02509	Sorghum	nucleus	95.83	95.83
Os01t0141900-01	Rice	nucleus	86.17	85.31
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	78.5	77.09
TraesCS3B01G067400.1	Wheat	nucleus	75.17	71.36
TraesCS3D01G054400.1	Wheat	cytosol	75.0	71.32
TraesCS3A01G055100.2	Wheat	cytosol	71.5	62.45
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	49.0	57.76
PGSC0003DMT400069903	Potato	cytosol, nucleus, plastid	15.33	57.5
VIT_13s0067g00570.t01	Wine grape	nucleus	50.5	55.6
GSMUA_Achr8P02330_001	Banana	cytosol	54.5	54.68
VIT_08s0007g02160.t01	Wine grape	nucleus	49.67	54.38
PGSC0003DMT400059907	Potato	plastid	15.5	53.14
GSMUA_Achr10P...	Banana	nucleus	48.67	51.87
Bra004992.1-P	Field mustard	nucleus	49.5	50.42
KRG97756	Soybean	nucleus	50.33	50.25
CDX74811	Canola	nucleus	49.0	50.0
AT2G40070.1	Thale cress	nucleus	49.67	49.09
CDY20509	Canola	cytosol	49.17	49.08
Solyc03g096090.2.1	Tomato	plastid	39.67	48.97
Bra000164.1-P	Field mustard	nucleus	49.67	48.93
KRH00210	Soybean	nucleus	42.0	48.93
CDY07628	Canola	nucleus	49.5	48.77
CDY60338	Canola	nucleus	49.5	48.69
KRH49356	Soybean	nucleus	41.5	48.35
KRH31123	Soybean	nucleus	49.33	47.82
Zm00001d008599_P001	Maize	cytosol	14.17	46.96
AT3G09000.1	Thale cress	nucleus	40.0	44.36
Bra034046.1-P	Field mustard	nucleus	38.0	44.27
CDY53090	Canola	nucleus	37.17	43.73
PGSC0003DMT400021880	Potato	nucleus	38.67	43.36
CDY22176	Canola	nucleus	37.17	43.22
Bra029739.1-P	Field mustard	nucleus	37.83	42.91
CDY44674	Canola	nucleus	37.67	42.72
KRH14961	Soybean	nucleus	47.33	42.52
PGSC0003DMT400031154	Potato	nucleus	29.67	42.48
Solyc09g014490.2.1	Tomato	nucleus	37.67	42.24
KRH73177	Soybean	nucleus	47.5	41.19
PGSC0003DMT400031157	Potato	nucleus	10.5	40.65
Bra028894.1-P	Field mustard	nucleus	32.33	38.34
CDY48118	Canola	nucleus	32.33	38.34
CDY55901	Canola	nucleus	32.33	38.34
GSMUA_Achr5P28870_001	Banana	cytosol	45.17	38.33
AT5G01280.1	Thale cress	mitochondrion, nucleus	30.67	38.02
PGSC0003DMT400069902	Potato	cytosol	10.0	37.74
AT2G38160.3	Thale cress	nucleus	20.0	37.5
CDX93325	Canola	nucleus	18.67	33.73
Bra017135.1-P	Field mustard	nucleus	17.67	27.75
CDY18403	Canola	nucleus	17.33	27.23
Zm00001d010620_P001	Maize	nucleus	23.5	24.44
Zm00001d038489_P001	Maize	nucleus	22.67	23.53
Zm00001d043074_P001	Maize	cytosol	21.0	22.78
Zm00001d012515_P002	Maize	nucleus	20.83	22.69
Zm00001d041124_P002	Maize	nucleus	17.5	9.27
Zm00001d023797_P004	Maize	nucleus	17.67	8.89
Zm00001d041136_P002	Maize	nucleus	16.33	8.4

Protein Annotations

EMBL:BT062939	EMBL:BT067418	EMBL:BT085704	EnsemblPlants:Zm00001d039901_P003	EnsemblPlants:Zm00001d039901_T003	EnsemblPlantsGene:Zm00001d039901
EntrezGene:100279421	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	ProteinID:ONM30130.1	SEG:seg	UniParc:UPI0001948E7C
UniProt:C0P3S0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3:-:18645191..18650610

Molecular Weight (calculated)

62456.3 Da

IEP (calculated)

12.008

GRAVY (calculated)

-0.719

Length

600 amino acids

Sequence
(BLAST)

001: MQRRVGMADG EARGRTLGAV IKEKDEELAL FLEMRRREKE RGAAAAAAAV AAADQLLLSG DSVAGDGMLL LGPPPPAEPK PVAYKVAGGG FRRAPGGADD
101: FLHADAGDKN DYDWLLTPPG TPLFPSLEVE SKRSPVSQAG TPKTRPTALK SRLSNHPDPP SRTNLPLRTT SSNSLNSGAT TRRPSSSGGL TSNSSRPSTP
201: TGRPTLTASS KGSRPSTPTS RTTVPAKTGA SVSRSSTPTL RSTLPSARST TPSSRAVGPA SRTSAPIGRA SAPASRSSTP TSRSSIPATR STTPSSRPSI
301: PAQSKPTSRA STPTRRPSAP SAQHGNLAAP VRSSSISKPG STMPKGSSPA KTAAPTPSRG SSPTVKSRPW KPSEMPGFSL DAPPNLRTSL PERPTSATRG
401: RPGAPSSRSC SVESGPAGRP RRQSCSPSRG RTLSGSVPSG SSMPAVRRSH LNGGDSVNPV QMGNKMVERV VNMRRLVPPK HDDQRSSLNS VSGKTSNSPD
501: SSGFGRTLSK KSLDMALRHM DIRRSIPNNL RPLMTSIPPS SVHSARSGST RSRPMSVSDS PLATSSNASS EPSVNNNLMC LDGIYMDDEL CSDRAGPYGR

Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)

001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.