CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004992.1-P	Field mustard	nucleus	92.35	92.19
CDY20509	Canola	cytosol	92.01	90.02
AT2G40070.1	Thale cress	nucleus	77.21	74.79
CDY60338	Canola	nucleus	74.49	71.8
CDY07628	Canola	nucleus	74.32	71.76
PGSC0003DMT400069903	Potato	cytosol, nucleus, plastid	17.52	64.38
PGSC0003DMT400059907	Potato	plastid	18.88	63.43
VIT_13s0067g00570.t01	Wine grape	nucleus	56.8	61.28
KRG97756	Soybean	nucleus	59.52	58.24
KRH31123	Soybean	nucleus	59.52	56.54
Solyc03g096090.2.1	Tomato	plastid	44.05	53.29
PGSC0003DMT400031157	Potato	nucleus	13.95	52.9
PGSC0003DMT400069902	Potato	cytosol	13.61	50.31
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	43.2	49.9
Os01t0141900-01	Rice	nucleus	51.02	49.51
EES02509	Sorghum	nucleus	50.0	49.0
Zm00001d039901_P003	Maize	nucleus	50.0	49.0
KRH14961	Soybean	nucleus	53.4	47.01
GSMUA_Achr8P02330_001	Banana	cytosol	47.45	46.66
GSMUA_Achr10P...	Banana	nucleus	44.56	46.54
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	47.96	46.15
PGSC0003DMT400031154	Potato	nucleus	32.31	45.35
TraesCS3D01G054400.1	Wheat	cytosol	48.64	45.32
TraesCS3B01G067400.1	Wheat	nucleus	48.3	44.94
KRH73177	Soybean	nucleus	52.38	44.51
CDY44674	Canola	nucleus	38.78	43.1
TraesCS3A01G055100.2	Wheat	cytosol	49.49	42.36
CDY53090	Canola	nucleus	36.73	42.35
CDY22176	Canola	nucleus	36.9	42.05
CDY55901	Canola	nucleus	33.67	39.13
CDY48118	Canola	nucleus	33.5	38.93
GSMUA_Achr5P28870_001	Banana	cytosol	42.01	34.94
CDX93325	Canola	nucleus	19.05	33.73
CDY18403	Canola	nucleus	17.52	26.96
CDY00658	Canola	nucleus	23.98	26.11
CDX73938	Canola	nucleus	23.64	25.74
CDY27987	Canola	nucleus	25.68	24.79
CDY35995	Canola	nucleus	25.51	24.71
CDX90111	Canola	nucleus	19.22	10.65
CDY11763	Canola	nucleus	19.22	10.5
CDY27635	Canola	nucleus	20.07	10.47
CDX84901	Canola	mitochondrion, nucleus	19.9	10.26

Protein Annotations

EnsemblPlants:CDX74811	EnsemblPlantsGene:GSBRNA2T00116785001	ncoils:Coil	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	ProteinID:CDX74811
ProteinID:CDX74811.1	SEG:seg	UniParc:UPI0004EECB1C	MapMan:35.2	:	:

Description

BnaA05g05570D

Coordinates

chrLK031802:+:757536..760710

Molecular Weight (calculated)

62151.4 Da

IEP (calculated)

12.066

GRAVY (calculated)

-0.937

Length

588 amino acids

Sequence
(BLAST)

001: MNRSFRAHES RLLDSAARQR QQLRASMMAE KDEELSLFLE MRRREKEQDS SKPGTSPVFN ISSGAAPARK TGPPDDFLNS EGDKNDYEWL LTPPGTPLFP
101: SLEMESHRTM MNQTGDSKGR PATLTSRLAN SSSEPAARNH LTSRQPQTSS SNGTTRRPSS SGGPGSRPGS AGGPGSRPAT PAGRSSTTLT TNSKSSRPST
201: PTSRSSTTRP SLTNSRSTAS ATTKPTPMSR STSSSRLTPT ASKPTTRPAG STTRSTTSTA TTRSAGPSRS TTPLSRSTAR SSTPTSSRPT LPPPKTISRS
301: STPTRRPPSA ATTTTSKPSQ IKPSSPASKP TPSKTTPAAA SRAPSPTVRS RPWKPSDMPG FSLETPPNLR TTLPERPLSA TRGRPGAPSP RSNSVELAGG
401: GRPRRQSCSP SRGRAPMYAS GSSVPAVNRG YSKANDNVSP VMMGAKMVER VINMRKLAPP RSDEKGSPHG NLSAKSSSPD SAGFGRTLSK KSLDMAIRHM
501: DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS PLATSSNASS EISVYNNNGV CLEAASEKED DAGSERGCRS PPASLQGR

Best Arabidopsis Sequence Match ( AT2G40070.1 )
(BLAST)

001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.