Factsheet for PGSC0003DMT400069903

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059907	Potato	plastid	74.38	68.0
VIT_13s0067g00570.t01	Wine grape	nucleus	72.5	21.28
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	57.5	18.07
KRG97756	Soybean	nucleus	66.88	17.8
AT2G40070.1	Thale cress	nucleus	66.88	17.63
CDX74811	Canola	nucleus	64.38	17.52
Bra004992.1-P	Field mustard	nucleus	64.38	17.49
Bra000164.1-P	Field mustard	nucleus	65.62	17.24
CDY07628	Canola	nucleus	65.62	17.24
CDY60338	Canola	nucleus	65.62	17.21
CDY20509	Canola	cytosol	63.75	16.97
KRH31123	Soybean	nucleus	65.62	16.96
GSMUA_Achr10P...	Banana	nucleus	57.5	16.34
GSMUA_Achr8P02330_001	Banana	cytosol	58.75	15.72
Os01t0141900-01	Rice	nucleus	58.12	15.35
Zm00001d039901_P003	Maize	nucleus	57.5	15.33
EES02509	Sorghum	nucleus	57.5	15.33
KRH14961	Soybean	nucleus	63.75	15.27
KRH73177	Soybean	nucleus	63.12	14.6
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	55.62	14.57
TraesCS3D01G054400.1	Wheat	cytosol	56.88	14.42
TraesCS3B01G067400.1	Wheat	nucleus	56.88	14.4
PGSC0003DMT400021880	Potato	nucleus	46.88	14.02
TraesCS3A01G055100.2	Wheat	cytosol	56.88	13.25
GSMUA_Achr5P28870_001	Banana	cytosol	46.25	10.47
PGSC0003DMT400005965	Potato	nucleus	21.88	6.19
PGSC0003DMT400045033	Potato	nucleus	13.75	1.94
PGSC0003DMT400031154	Potato	nucleus	3.75	1.43
PGSC0003DMT400031157	Potato	nucleus	0.62	0.65
PGSC0003DMT400069902	Potato	cytosol	0.62	0.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400069903	EnsemblPlantsGene:PGSC0003DMG402027184	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	PGSC:PGSC0003DMG402027184	SEG:seg
UniParc:UPI000295F5CC	UniProt:M1CLC5	MapMan:35.2	:	:	:

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402027184]

Coordinates

chr5:-:47990937..47991767

Molecular Weight (calculated)

17230.5 Da

IEP (calculated)

11.001

GRAVY (calculated)

-0.613

Length

160 amino acids

Sequence
(BLAST)

001: MSRLHAKAND NVSPGMVGTK MVERVINMRK LAPPAKQDNK HSPRNNLYAH SASPDSTGFG RTLSKKSLDM AMRHMDIRRS ISGNLRPSMT NIPASSMYSV
101: RSGPNRTRTV SVSDSPLATS SNASSEVSVN NNTVCLDGSE VDDAISGVKG VRSPAYMHGR

Best Arabidopsis Sequence Match ( AT2G40070.3 )
(BLAST)

001: MESHRTMMSQ TGDSKSRPAT LTSRLANSST ESAARNHLTS RQQTSSPGLS SSSGASRRPS SSGGPGSRPA TPTGRSSTLT ANSKSSRPST PTSRATVSSA
101: TRPSLTNSRS TVSATTKPTP MSRSTSLSSS RLTPTASKPT TSTARSAGSV TRSTPSTTTK SAGPSRSTTP LSRSTARSST PTSRPTLPPS KTISRSSTPT
201: RRPIASASAA TTTANPTISQ IKPSSPAPAK PMPTPSKNPA LSRAASPTVR SRPWKPSDMP GFSLETPPNL RTTLPERPLS ATRGRPGAPS SRSGSVEPGG
301: PPGGRPRRQS CSPSRGRAPM YSSGSSVPAV NRGYSKASDN VSPVMMGTKM VERVINMRKL APPRSDDKGS PHGNLSAKSS SPDSAGFGRT LSKKSLDMAI
401: RHMDIRRTIP GNLRPLMTNI PASSMYSVRS GHTRGRPMNV SDSSPLATSS NASSEISVCN NNGICLEASE KEDDAGSERG CRSPASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.