Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr8P02330_001 | Banana | cytosol | 74.46 | 63.38 |
GSMUA_Achr10P... | Banana | nucleus | 67.19 | 60.75 |
PGSC0003DMT400069903 | Potato | cytosol, nucleus, plastid | 18.07 | 57.5 |
VIT_13s0067g00570.t01 | Wine grape | nucleus | 58.94 | 55.05 |
PGSC0003DMT400059907 | Potato | plastid | 18.27 | 53.14 |
Os01t0141900-01 | Rice | nucleus | 59.33 | 49.84 |
EES02509 | Sorghum | nucleus | 57.96 | 49.17 |
Zm00001d039901_P003 | Maize | nucleus | 57.76 | 49.0 |
VIT_08s0007g02160.t01 | Wine grape | nucleus | 51.87 | 48.18 |
KRH49356 | Soybean | nucleus | 48.53 | 47.96 |
KRH00210 | Soybean | nucleus | 47.94 | 47.38 |
KRG97756 | Soybean | nucleus | 53.63 | 45.42 |
HORVU3Hr1G010470.4 | Barley | cytosol, nucleus | 54.42 | 45.34 |
AT2G40070.1 | Thale cress | nucleus | 53.83 | 45.14 |
Bra000164.1-P | Field mustard | nucleus | 53.05 | 44.34 |
CDY07628 | Canola | nucleus | 53.05 | 44.34 |
CDY60338 | Canola | nucleus | 52.85 | 44.1 |
Bra004992.1-P | Field mustard | nucleus | 50.49 | 43.63 |
Solyc03g096090.2.1 | Tomato | plastid | 41.65 | 43.62 |
TraesCS3D01G054400.1 | Wheat | cytosol | 54.03 | 43.58 |
PGSC0003DMT400021880 | Potato | nucleus | 45.78 | 43.55 |
TraesCS3B01G067400.1 | Wheat | nucleus | 54.03 | 43.51 |
CDY20509 | Canola | cytosol | 51.28 | 43.43 |
CDX74811 | Canola | nucleus | 49.9 | 43.2 |
KRH31123 | Soybean | nucleus | 51.87 | 42.65 |
GSMUA_Achr5P28870_001 | Banana | cytosol | 59.14 | 42.57 |
Solyc09g014490.2.1 | Tomato | nucleus | 44.4 | 42.24 |
PGSC0003DMT400031157 | Potato | nucleus | 12.38 | 40.65 |
TraesCS3A01G055100.2 | Wheat | cytosol | 54.62 | 40.47 |
KRH14961 | Soybean | nucleus | 52.06 | 39.67 |
CDY53090 | Canola | nucleus | 39.1 | 39.02 |
PGSC0003DMT400069902 | Potato | cytosol | 12.18 | 38.99 |
AT3G09000.1 | Thale cress | nucleus | 41.06 | 38.63 |
PGSC0003DMT400031154 | Potato | nucleus | 30.65 | 37.23 |
KRH73177 | Soybean | nucleus | 50.49 | 37.14 |
Bra034046.1-P | Field mustard | nucleus | 37.52 | 37.09 |
Bra029739.1-P | Field mustard | nucleus | 38.31 | 36.86 |
CDY44674 | Canola | nucleus | 38.11 | 36.67 |
CDY22176 | Canola | nucleus | 37.13 | 36.63 |
AT2G38160.3 | Thale cress | nucleus | 21.81 | 34.69 |
Bra028894.1-P | Field mustard | nucleus | 33.79 | 33.99 |
CDY55901 | Canola | nucleus | 33.79 | 33.99 |
AT5G01280.1 | Thale cress | mitochondrion, nucleus | 32.22 | 33.88 |
CDY48118 | Canola | nucleus | 33.6 | 33.79 |
CDX93325 | Canola | nucleus | 20.24 | 31.02 |
GSMUA_Achr10P... | Banana | mitochondrion | 14.34 | 26.84 |
CDY18403 | Canola | nucleus | 19.25 | 25.65 |
Bra017135.1-P | Field mustard | nucleus | 19.06 | 25.39 |
GSMUA_Achr3P09700_001 | Banana | cytosol | 21.81 | 23.22 |
GSMUA_Achr6P25180_001 | Banana | cytosol | 24.75 | 21.72 |
GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 15.52 | 16.09 |
GSMUA_Achr2P20960_001 | Banana | nucleus | 21.02 | 10.73 |
GSMUA_Achr3P17040_001 | Banana | nucleus | 21.22 | 10.02 |
GSMUA_Achr6P12380_001 | Banana | nucleus | 19.84 | 8.54 |
Protein Annotations
EnsemblPlants:GSMUA_Achr6P33750_001 | EnsemblPlants:GSMUA_Achr6T33750_001 | EnsemblPlantsGene:GSMUA_Achr6G33750_001 | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF1 | SEG:seg |
UniParc:UPI0002958995 | UniProt:M0TCG8 | MapMan:35.2 | : | : | : |
Description
retrotransposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G33750_001]
Coordinates
chr6:+:32690149..32700474
Molecular Weight (calculated)
53516.3 Da
IEP (calculated)
11.706
GRAVY (calculated)
-0.797
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRSLRAAVA PSPGRTMTKQ ADEELALFLE MRKLEKEQNN LLLHSTAELD PPLGSKPGTA PIFKIASSAP AREAGIGDFL NSDSEKNDYD WLLTPPGTPL
101: FPSLDTESKR SPVSSTGTPK NRSTLQKSRL ANAPDPSRNA ASRQPTTSSG LNSSTVGTRR PSSSGGPTHS ASRPVTPNGR PTLTAASKPT RASTPTSRNA
201: LPSKSCAPPP RSSTPVRYST QTSRSSVPAA SKTASRSATP TRRPSAISAV PSSSAPSSRS SSVARSGSTV SKGSTPCGSS SAIKPRSLKP SCTPGSSHDA
301: PSNSHTSLPE RPSASRGRPG APNIRSSSVE PGPNVRPRRQ SCSPSRGRVP NGNVHKGSSV PPSSRPHANA NDNMNPVLIG NKMVERIVNM RRLVPPKQDD
401: QRSSHNNLSG KSSLTPDSTG FGRTLSKKSL DMALRHMDIR RSVPNSSRPS MTNVPALSVY VRSGPTRSRT VGVSDSPLAT SSTASSEHSV NNNTICLDGN
501: EIEDDLTKQ
101: FPSLDTESKR SPVSSTGTPK NRSTLQKSRL ANAPDPSRNA ASRQPTTSSG LNSSTVGTRR PSSSGGPTHS ASRPVTPNGR PTLTAASKPT RASTPTSRNA
201: LPSKSCAPPP RSSTPVRYST QTSRSSVPAA SKTASRSATP TRRPSAISAV PSSSAPSSRS SSVARSGSTV SKGSTPCGSS SAIKPRSLKP SCTPGSSHDA
301: PSNSHTSLPE RPSASRGRPG APNIRSSSVE PGPNVRPRRQ SCSPSRGRVP NGNVHKGSSV PPSSRPHANA NDNMNPVLIG NKMVERIVNM RRLVPPKQDD
401: QRSSHNNLSG KSSLTPDSTG FGRTLSKKSL DMALRHMDIR RSVPNSSRPS MTNVPALSVY VRSGPTRSRT VGVSDSPLAT SSTASSEHSV NNNTICLDGN
501: EIEDDLTKQ
001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR
Arabidopsis Description
At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.