CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034046.1-P	Field mustard	nucleus	87.21	87.38
CDY53090	Canola	nucleus	66.67	67.45
AT3G09000.1	Thale cress	nucleus	68.22	65.06
CDY44674	Canola	nucleus	64.53	62.95
CDY48118	Canola	nucleus	41.67	42.49
CDY55901	Canola	nucleus	41.47	42.29
KRH49356	Soybean	nucleus	40.12	40.19
KRH00210	Soybean	nucleus	39.53	39.61
VIT_08s0007g02160.t01	Wine grape	nucleus	40.12	37.77
EES02509	Sorghum	nucleus	43.41	37.33
Zm00001d039901_P003	Maize	nucleus	43.22	37.17
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	36.63	37.13
Os01t0141900-01	Rice	nucleus	43.41	36.96
CDY20509	Canola	cytosol	43.02	36.94
CDX74811	Canola	nucleus	42.05	36.9
CDY60338	Canola	nucleus	43.6	36.89
CDY07628	Canola	nucleus	43.22	36.62
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	41.28	34.86
GSMUA_Achr10P...	Banana	nucleus	37.6	34.46
TraesCS3B01G067400.1	Wheat	nucleus	41.67	34.02
GSMUA_Achr8P02330_001	Banana	cytosol	39.34	33.95
TraesCS3D01G054400.1	Wheat	cytosol	41.47	33.91
CDX93325	Canola	nucleus	21.12	32.83
PGSC0003DMT400021880	Potato	nucleus	33.53	32.34
TraesCS3A01G055100.2	Wheat	cytosol	42.25	31.73
Solyc09g014490.2.1	Tomato	nucleus	32.56	31.4
GSMUA_Achr5P28870_001	Banana	cytosol	35.27	25.74
CDY18403	Canola	nucleus	18.99	25.65
CDX73938	Canola	nucleus	26.16	25.0
CDY00658	Canola	nucleus	25.97	24.81
CDY27987	Canola	nucleus	27.52	23.32
CDY35995	Canola	nucleus	27.13	23.06
CDX90111	Canola	nucleus	20.16	9.8
CDY11763	Canola	nucleus	19.77	9.48
CDX84901	Canola	mitochondrion, nucleus	18.6	8.42
CDY27635	Canola	nucleus	18.22	8.34

Protein Annotations

EnsemblPlants:CDY22176	EnsemblPlantsGene:GSBRNA2T00018582001	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	ProteinID:CDY22176	ProteinID:CDY22176.1
SEG:seg	UniParc:UPI0004EE1D0E	UniProt:A0A078G9V8	MapMan:35.2	:	:

Description

BnaC01g39250DBnaC01g39250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9V8]

Coordinates

chrLK032128:+:363576..365514

Molecular Weight (calculated)

54896.1 Da

IEP (calculated)

11.777

GRAVY (calculated)

-0.789

Length

516 amino acids

Sequence
(BLAST)

001: MLNQDRDEEL SMFLEMRRRE KEHRGESLLT GSDNVSINGA LTTAVSTALS GISSETVSSQ PYSLRRTAAE NFLYSENEKS DYDWLLTPPG TPQFEKESHR
101: SVMNQSDAPN SRPTVLKSRL GNCGEEMISR NNDKTQMSSA SGPSSVSGLR RPSSSCSSRS TSRPSTPTNR STSRPSRPTR RSTTTTTSTT RPVTTTRAST
201: SRSSTPTSGP TLTAARATTS TTAPRTTTST GSARSATPTR SKTQPSSAPS KKPLSRPATP TRRPSTPTDP SIVSGKAPSR GTSPAPTVKS SRPQKPPEMP
301: GFSLEAPPNL RTTLSDRPVS ARGRPGVASA PGSRSSSIER SSGGMGHSRR QSCSPSRGHA PIGSTNGSLP GARVRGKAYN DSFSPVAMGN KMVERVVNMR
401: KLGPPRLTEN GGGRGTVKSN SAFNTLGYGR NLSKSSIDMA LRHMDIRRGM TGNLRPLVTK VPASAMYSVR SRSTSVTNSP VATSSTISSS ELMSVDNINI
501: LCLDGNDDLL SERSFS

Best Arabidopsis Sequence Match ( AT5G01280.1 )
(BLAST)

001: MRRCEKRHRP TLLMESDNTS STTAMSSQQY PVRRTAGENL LYSDGEKSDY EWLVTPPGSP SRNVTNHLNA PDDNLMTLIS RLENYSKEES EHQTTSLHSS
101: SSVSGIRRPS SSSSSRSTSR PPTPTRKSKT PAKRPSTPTS RATSTTTRAT LTSSSTTSST RSWSRPSSSS GTGTSRVTLT AARATRPTTS TDQQTTGSAT
201: STRSNNRPMS APNSKPGSRS STPTRRPSTP NGSSTVLRSK PTKPLSKPAL SLEASPIVRS RPWEPYEMPG FSVEAPSNLR TTLPDRPQTA SSSRTRAFDA
301: SSSSRSASTE RDVAKRQSCS PSRSRAPNGN VNGAVPSLRG QRAKTNNDDG RLISHAAKGN QKVEKVVNMR KLATPRLTES GSRRLGGGGG DSSAGKSSSG
401: SGGFGFGRNL SKSSIDMALR HMDVRKGSMA GNFRHSVTKA PATSVYSVRS CRNRPVSSSR SSESSVNILC LDGSDDNLSD MSCS

Arabidopsis Description

BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 /.../e: NCBI BLink). [Source:TAIR;Acc:AT5G01280]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.