Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G054400.1 | Wheat | cytosol | 98.26 | 98.42 |
| HORVU3Hr1G010470.4 | Barley | cytosol, nucleus | 84.18 | 87.07 |
| TraesCS3A01G055100.2 | Wheat | cytosol | 85.28 | 78.46 |
| EES02509 | Sorghum | nucleus | 72.47 | 76.33 |
| Os01t0141900-01 | Rice | nucleus | 73.1 | 76.24 |
| Zm00001d039901_P003 | Maize | nucleus | 71.36 | 75.17 |
| PGSC0003DMT400069903 | Potato | cytosol, nucleus, plastid | 14.4 | 56.88 |
| PGSC0003DMT400059907 | Potato | plastid | 15.03 | 54.29 |
| GSMUA_Achr6P33750_001 | Banana | cytosol, mitochondrion | 43.51 | 54.03 |
| VIT_13s0067g00570.t01 | Wine grape | nucleus | 45.09 | 52.29 |
| GSMUA_Achr8P02330_001 | Banana | cytosol | 48.26 | 51.0 |
| VIT_08s0007g02160.t01 | Wine grape | nucleus | 43.99 | 50.73 |
| GSMUA_Achr10P... | Banana | nucleus | 44.62 | 50.09 |
| KRG97756 | Soybean | nucleus | 47.31 | 49.75 |
| Bra004992.1-P | Field mustard | nucleus | 45.25 | 48.56 |
| CDX74811 | Canola | nucleus | 44.94 | 48.3 |
| CDY20509 | Canola | cytosol | 45.25 | 47.59 |
| KRH00210 | Soybean | nucleus | 38.77 | 47.57 |
| CDY07628 | Canola | nucleus | 45.57 | 47.29 |
| Bra000164.1-P | Field mustard | nucleus | 45.57 | 47.29 |
| AT2G40070.1 | Thale cress | nucleus | 45.41 | 47.28 |
| KRH31123 | Soybean | nucleus | 46.04 | 47.01 |
| CDY60338 | Canola | nucleus | 45.25 | 46.89 |
| KRH49356 | Soybean | nucleus | 38.13 | 46.8 |
| Solyc03g096090.2.1 | Tomato | plastid | 35.92 | 46.71 |
| CDY53090 | Canola | nucleus | 35.28 | 43.73 |
| KRH14961 | Soybean | nucleus | 45.25 | 42.81 |
| Bra029739.1-P | Field mustard | nucleus | 35.13 | 41.97 |
| CDY44674 | Canola | nucleus | 35.13 | 41.97 |
| Bra034046.1-P | Field mustard | nucleus | 34.02 | 41.75 |
| CDY22176 | Canola | nucleus | 34.02 | 41.67 |
| AT3G09000.1 | Thale cress | nucleus | 35.28 | 41.22 |
| PGSC0003DMT400021880 | Potato | nucleus | 34.81 | 41.12 |
| KRH73177 | Soybean | nucleus | 43.83 | 40.03 |
| Solyc09g014490.2.1 | Tomato | nucleus | 33.54 | 39.63 |
| AT5G01280.1 | Thale cress | mitochondrion, nucleus | 30.22 | 39.46 |
| PGSC0003DMT400031154 | Potato | nucleus | 25.63 | 38.66 |
| CDY55901 | Canola | nucleus | 30.54 | 38.14 |
| Bra028894.1-P | Field mustard | nucleus | 30.54 | 38.14 |
| CDY48118 | Canola | nucleus | 30.38 | 37.94 |
| GSMUA_Achr5P28870_001 | Banana | cytosol | 42.09 | 37.62 |
| AT2G38160.3 | Thale cress | nucleus | 18.04 | 35.62 |
| PGSC0003DMT400031157 | Potato | nucleus | 8.7 | 35.48 |
| PGSC0003DMT400069902 | Potato | cytosol | 8.86 | 35.22 |
| CDX93325 | Canola | nucleus | 16.93 | 32.23 |
| Bra017135.1-P | Field mustard | nucleus | 15.98 | 26.44 |
| CDY18403 | Canola | nucleus | 15.66 | 25.92 |
| TraesCS3B01G374300.1 | Wheat | nucleus | 21.04 | 24.09 |
| TraesCS1B01G311900.2 | Wheat | nucleus | 20.57 | 20.41 |
| TraesCS5B01G121900.1 | Wheat | nucleus | 16.3 | 8.72 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G067400.1 | EnsemblPlantsGene:TraesCS3B01G067400 | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF1 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr3B:-:39905713..39910610
Molecular Weight (calculated)
65616.4 Da
IEP (calculated)
12.064
GRAVY (calculated)
-0.790
Length
632 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRVAMAEGA GGGGRTLGAV IREKDEELAL FLEMRRRDKE RAGAAADMLL SGDGEDPDGD GLLLLDPSPP PPPPVVPAEP RAAPAPAYRM AGGFRRAPGG
101: ADDFLHSDAG DKSDYDWLLT PPGTPLFPSH EAAPKRSPVS QTGSPKTRQN SLKSRLANHP DPPSRTTHPL RTTSSNSLNS AATTRRPTSS GGLTSNSSRP
201: STPTGRAAST TASKGSRPAS PNARATLPAK TGPTAPRSST PTSRSTLSST RSALPSSRST TPSRTSGPAT ATRTSGPAAA TRTSGPATAT RTSVPSGRAS
301: APASRSSTPT SRSSMPATRS TTPLSRPSLP AQSKPASRSS TPTRRSSAPP IHTQHSNLPG PVRSSSISRP GPTMPKSSAS AATTTAPAPS RGSSPTVKSR
401: PWKPSEMPGF SLDAPPNLRT SLPERPTSAT RGRPGAPSSR SSSVEPGPAA RPKRQSCSPS RGRTSNGSVP SGSSMPAVRR SHLNGGDSVN PVQMGNKMVE
501: RVVNMRRLAP PKHDDQRSSL NSLSGKSLNS PDSSGFGRSL SKKSLDMALR HMDIRRSIPN NLRPLMTSIP ASSVHSGRSG STRGRPISVS DSPLATSSNA
601: SSEPSVNNNL MCFDNIDIDD ELCSDRAGHY AR
101: ADDFLHSDAG DKSDYDWLLT PPGTPLFPSH EAAPKRSPVS QTGSPKTRQN SLKSRLANHP DPPSRTTHPL RTTSSNSLNS AATTRRPTSS GGLTSNSSRP
201: STPTGRAAST TASKGSRPAS PNARATLPAK TGPTAPRSST PTSRSTLSST RSALPSSRST TPSRTSGPAT ATRTSGPAAA TRTSGPATAT RTSVPSGRAS
301: APASRSSTPT SRSSMPATRS TTPLSRPSLP AQSKPASRSS TPTRRSSAPP IHTQHSNLPG PVRSSSISRP GPTMPKSSAS AATTTAPAPS RGSSPTVKSR
401: PWKPSEMPGF SLDAPPNLRT SLPERPTSAT RGRPGAPSSR SSSVEPGPAA RPKRQSCSPS RGRTSNGSVP SGSSMPAVRR SHLNGGDSVN PVQMGNKMVE
501: RVVNMRRLAP PKHDDQRSSL NSLSGKSLNS PDSSGFGRSL SKKSLDMALR HMDIRRSIPN NLRPLMTSIP ASSVHSGRSG STRGRPISVS DSPLATSSNA
601: SSEPSVNNNL MCFDNIDIDD ELCSDRAGHY AR
001: MNRSFRAKES LLLDSAERQR QQLRASMMAE KDEELSLFLE MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR
101: YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS
201: KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS
301: RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR
401: GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD
501: SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS
601: PASLQGR
Arabidopsis Description
At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.