Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44674 | Canola | nucleus | 76.27 | 73.53 |
| CDY22176 | Canola | nucleus | 67.45 | 66.67 |
| AT3G09000.1 | Thale cress | nucleus | 68.63 | 64.69 |
| KRH49356 | Soybean | nucleus | 42.55 | 42.14 |
| KRH00210 | Soybean | nucleus | 42.35 | 41.94 |
| VIT_08s0007g02160.t01 | Wine grape | nucleus | 42.75 | 39.78 |
| CDY48118 | Canola | nucleus | 39.41 | 39.72 |
| CDY55901 | Canola | nucleus | 39.22 | 39.53 |
| GSMUA_Achr6P33750_001 | Banana | cytosol, mitochondrion | 39.02 | 39.1 |
| EES02509 | Sorghum | nucleus | 43.92 | 37.33 |
| Zm00001d039901_P003 | Maize | nucleus | 43.73 | 37.17 |
| Os01t0141900-01 | Rice | nucleus | 44.12 | 37.13 |
| CDY20509 | Canola | cytosol | 43.33 | 36.77 |
| CDX74811 | Canola | nucleus | 42.35 | 36.73 |
| CDY60338 | Canola | nucleus | 43.73 | 36.56 |
| CDY07628 | Canola | nucleus | 43.53 | 36.45 |
| GSMUA_Achr10P... | Banana | nucleus | 39.61 | 35.88 |
| HORVU3Hr1G010470.4 | Barley | cytosol, nucleus | 42.55 | 35.52 |
| TraesCS3D01G054400.1 | Wheat | cytosol | 43.73 | 35.34 |
| TraesCS3B01G067400.1 | Wheat | nucleus | 43.73 | 35.28 |
| GSMUA_Achr8P02330_001 | Banana | cytosol | 40.0 | 34.11 |
| TraesCS3A01G055100.2 | Wheat | cytosol | 44.12 | 32.75 |
| PGSC0003DMT400021880 | Potato | nucleus | 34.12 | 32.52 |
| Solyc09g014490.2.1 | Tomato | nucleus | 33.73 | 32.15 |
| CDX93325 | Canola | nucleus | 20.78 | 31.93 |
| GSMUA_Achr5P28870_001 | Banana | cytosol | 36.86 | 26.59 |
| CDY18403 | Canola | nucleus | 18.82 | 25.13 |
| CDX73938 | Canola | nucleus | 25.69 | 24.26 |
| CDY00658 | Canola | nucleus | 25.49 | 24.07 |
| CDY27987 | Canola | nucleus | 26.67 | 22.33 |
| CDY35995 | Canola | nucleus | 26.08 | 21.91 |
| CDX90111 | Canola | nucleus | 17.65 | 8.48 |
| CDY11763 | Canola | nucleus | 17.45 | 8.27 |
| CDX84901 | Canola | mitochondrion, nucleus | 17.25 | 7.72 |
| CDY27635 | Canola | nucleus | 16.67 | 7.54 |
Protein Annotations
| EnsemblPlants:CDY53090 | EnsemblPlantsGene:GSBRNA2T00008524001 | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF1 | ProteinID:CDY53090 | ProteinID:CDY53090.1 |
| SEG:seg | UniParc:UPI0004EDD8E0 | UniProt:A0A078IPV1 | MapMan:35.2 | : | : |
Description
BnaCnng24200DBnaCnng24200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPV1]
Coordinates
chrLK033163:+:23565..26024
Molecular Weight (calculated)
54529.5 Da
IEP (calculated)
11.860
GRAVY (calculated)
-0.859
Length
510 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTHDRDEEL SMFLEMRRRD KERRGESLLT GSDSTSINGA LTTALSGVSE MVSSQRYPLR RTAAENFLYS ENEKSDYDWL LTPPGTPQFE KESHRSVMEQ
101: SDAPSSRPTN LKSRLGNYRE DIVSGNNNKS LMSSSSSVAG LRRPSSSGSS RSTSRPSTPT RRSTTPTTST TRPVTTTRAS NSRSSTPTSR ATLTAARATT
201: STAAPRTTTS RSATPTRTKT QPSSAPSKKP LSRPATPTRR SPTPTGPLIV SSKAPSRGTS PTPTVKSSKS WKPREMPGFS LEAPPNLRTS VSDRPVSATR
301: GRPGVASAPG SRSSSIERGN GAISNGAGHA RRQSCSPSRG RAPVGNTNGS LPGARGRGKA NNGDSPVAMG NKMVERVVNM RKLGPPRLTE SGGRGTSKSS
401: SAFNSLGYGR NLSKSSIDMA LRHMDIRRGM TGNLRPLVTK VPASSMYSVR SRSNSVTNSP MATSSTVSSS EPNFDNINIL CLDGNDAEND DLLSERSFSS
501: PRDQFPKFTS
101: SDAPSSRPTN LKSRLGNYRE DIVSGNNNKS LMSSSSSVAG LRRPSSSGSS RSTSRPSTPT RRSTTPTTST TRPVTTTRAS NSRSSTPTSR ATLTAARATT
201: STAAPRTTTS RSATPTRTKT QPSSAPSKKP LSRPATPTRR SPTPTGPLIV SSKAPSRGTS PTPTVKSSKS WKPREMPGFS LEAPPNLRTS VSDRPVSATR
301: GRPGVASAPG SRSSSIERGN GAISNGAGHA RRQSCSPSRG RAPVGNTNGS LPGARGRGKA NNGDSPVAMG NKMVERVVNM RKLGPPRLTE SGGRGTSKSS
401: SAFNSLGYGR NLSKSSIDMA LRHMDIRRGM TGNLRPLVTK VPASSMYSVR SRSNSVTNSP MATSSTVSSS EPNFDNINIL CLDGNDAEND DLLSERSFSS
501: PRDQFPKFTS
001: MLTHDRDEEL SLFLEMRRRE KEHRADSLLT GSDNVSINAT LTAAAAAALS GVSETASSQR YPLRRTAAEN FLYSENEKSD YDWLLTPPGT PQFEKESHRS
101: VMNQHDAPNS RPTVLKSRLG NCREDIVSGN NNKPQTSSSS VAGLRRPSSS GSSRSTSRPA TPTRRSTTPT TSTSRPVTTR ASNSRSSTPT SRATLTAARA
201: TTSTAAPRTT TTSSGSARSA TPTRSNPRPS SASSKKPVSR PATPTRRPST PTGPSIVSSK APSRGTSPSP TVNSLSKAPS RGTSPSPTLN SSRPWKPPEM
301: PGFSLEAPPN LRTTLADRPV SASRGRPGVA SAPGSRSGSI ERGGGPTSGG SGNARRQSCS PSRGRAPIGN TNGSLTGVRG RAKASNGGSG CDNLSPVAMG
401: NKMVERVVNM RKLGPPRLTE NGGRGSGKSS SAFNSLGYGR NLSKSSIDMA IRHMDIRRGM TGNLRPLVTK VPASSMYSVR SRPGSVSSSP VATSSTVSSS
501: DPSVDNINIL CLDGNEAEND DLLSERSYAA SPRNQYPKFT S
101: VMNQHDAPNS RPTVLKSRLG NCREDIVSGN NNKPQTSSSS VAGLRRPSSS GSSRSTSRPA TPTRRSTTPT TSTSRPVTTR ASNSRSSTPT SRATLTAARA
201: TTSTAAPRTT TTSSGSARSA TPTRSNPRPS SASSKKPVSR PATPTRRPST PTGPSIVSSK APSRGTSPSP TVNSLSKAPS RGTSPSPTLN SSRPWKPPEM
301: PGFSLEAPPN LRTTLADRPV SASRGRPGVA SAPGSRSGSI ERGGGPTSGG SGNARRQSCS PSRGRAPIGN TNGSLTGVRG RAKASNGGSG CDNLSPVAMG
401: NKMVERVVNM RKLGPPRLTE NGGRGSGKSS SAFNSLGYGR NLSKSSIDMA IRHMDIRRGM TGNLRPLVTK VPASSMYSVR SRPGSVSSSP VATSSTVSSS
501: DPSVDNINIL CLDGNEAEND DLLSERSYAA SPRNQYPKFT S
Arabidopsis Description
AT3g09000/T16O11_4 [Source:UniProtKB/TrEMBL;Acc:Q9S7V5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.