CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18403	Canola	nucleus	68.67	59.69
AT2G38160.3	Thale cress	nucleus	51.2	53.12
KRH00210	Soybean	nucleus	37.65	24.27
VIT_08s0007g02160.t01	Wine grape	nucleus	37.35	22.63
KRH49356	Soybean	nucleus	34.94	22.52
PGSC0003DMT400021880	Potato	nucleus	35.54	22.06
Solyc09g014490.2.1	Tomato	nucleus	34.94	21.68
CDY22176	Canola	nucleus	32.83	21.12
CDY53090	Canola	nucleus	31.93	20.78
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	31.02	20.24
CDY44674	Canola	nucleus	32.23	20.23
CDY55901	Canola	nucleus	30.42	19.96
CDY48118	Canola	nucleus	30.42	19.96
CDY07628	Canola	nucleus	35.84	19.54
CDY60338	Canola	nucleus	35.84	19.51
CDY20509	Canola	cytosol	34.64	19.13
CDX74811	Canola	nucleus	33.73	19.05
Zm00001d039901_P003	Maize	nucleus	33.73	18.67
EES02509	Sorghum	nucleus	33.43	18.5
GSMUA_Achr8P02330_001	Banana	cytosol	33.13	18.39
Os01t0141900-01	Rice	nucleus	33.13	18.15
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	31.93	17.35
GSMUA_Achr10P...	Banana	nucleus	29.22	17.23
TraesCS3B01G067400.1	Wheat	nucleus	32.23	16.93
TraesCS3D01G054400.1	Wheat	cytosol	31.63	16.64
TraesCS3A01G055100.2	Wheat	cytosol	33.13	16.01
GSMUA_Achr5P28870_001	Banana	cytosol	31.63	14.85
CDY00658	Canola	nucleus	22.89	14.07
CDX73938	Canola	nucleus	22.29	13.7
CDY35995	Canola	nucleus	21.08	11.53
CDY27987	Canola	nucleus	21.08	11.49
CDY11763	Canola	nucleus	16.57	5.11
CDX90111	Canola	nucleus	15.66	4.9
CDY27635	Canola	nucleus	16.57	4.88
CDX84901	Canola	mitochondrion, nucleus	15.96	4.65

Protein Annotations

EnsemblPlants:CDX93325	EnsemblPlantsGene:GSBRNA2T00155300001	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	ProteinID:CDX93325	ProteinID:CDX93325.1
SEG:seg	UniParc:UPI0004EE9309	MapMan:35.2	:	:	:

Description

BnaC04g45710D

Coordinates

chrLK031875:+:1034438..1036564

Molecular Weight (calculated)

36341.9 Da

IEP (calculated)

10.929

GRAVY (calculated)

-0.769

Length

332 amino acids

Sequence
(BLAST)

001: MANVVARDVD EELSLFLEMR RREKVQGVSS LSEPGTKSVE ETTTESLEST TTRYVHLRRS AIEKFLDSEN NKSDYEWLLA APETGGEEEA QENSMVKLKQ
101: SKAARSTALK PRVENIMQEA VTLSVKASKK TTRLDSSTAV SKQSNTIAEP KTKSKPSRQA TPTQRTTLSS ARPTNPAPRA SSIKSNPRAA AFTRSSSVGK
201: SVPTAAKSTS LTIREIPARP VSTSRTRVYS SGRRSTGRSS KISDDVNPVL MGTQMVERVV NMRKLPPPKH DDNNMNSGFG RTLSRSSLDM AMRHMNIKPS
301: VPGNLRVSSN ATNSMDKNKS SPSSYCPNMP AF

Best Arabidopsis Sequence Match ( AT2G38160.3 )
(BLAST)

001: MENVVVVRDG DEELSLFLEM RRREKLQGVS SLSQPGANSV EKTSTKSLEL LKTSCVKLRR SSVEKFLDSE NDKSDYEWLL AAPEITLLGG KENSMVKLKE
101: PKAKSTALKQ RVENIPQEPL TRSVKVSKPT PRTVSSKQAN TAAEVKPSIK PSRQATPTSR ATLPSTRLTN SAQKSNSESI TTSIKSNTRA SAFPRSSSVG
201: KSVSSAKCTT PKIPETRARP VSTSRSRVYS SGDRSTGRSK ISNDVNPVLM GTQMVERVVN MRKLPPPKHD DNTTLGFGRT LSRSSLDMAL RHMNIRHSVS
301: KNLRVTVSAS TNSMDKNESS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.2); Has 972 Blast hits to 731 proteins in 211 species: Archae - 0; Bacteria - 236; Metazoa - 194; Fungi - 201; Plants - 218; Viruses - 32; Other Eukaryotes /.../source: NCBI BLink). [Source:TAIR;Acc:AT2G38160]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.