Factsheet for GSMUA_Achr10P00690_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	60.75	67.19
GSMUA_Achr8P02330_001	Banana	cytosol	69.8	65.72
PGSC0003DMT400069903	Potato	cytosol, nucleus, plastid	16.34	57.5
VIT_13s0067g00570.t01	Wine grape	nucleus	54.0	55.78
PGSC0003DMT400059907	Potato	plastid	17.23	55.43
VIT_08s0007g02160.t01	Wine grape	nucleus	48.49	49.82
Os01t0141900-01	Rice	nucleus	52.93	49.17
EES02509	Sorghum	nucleus	52.4	49.17
Zm00001d039901_P003	Maize	nucleus	51.87	48.67
KRH00210	Soybean	nucleus	44.23	48.35
KRH49356	Soybean	nucleus	43.69	47.77
KRG97756	Soybean	nucleus	50.62	47.42
Solyc03g096090.2.1	Tomato	plastid	40.85	47.33
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	50.8	46.81
AT2G40070.1	Thale cress	nucleus	49.56	45.96
CDY07628	Canola	nucleus	49.38	45.65
Bra000164.1-P	Field mustard	nucleus	49.2	45.48
CDY60338	Canola	nucleus	49.2	45.41
Bra004992.1-P	Field mustard	nucleus	47.42	45.33
TraesCS3D01G054400.1	Wheat	cytosol	50.8	45.32
CDY20509	Canola	cytosol	47.96	44.93
TraesCS3B01G067400.1	Wheat	nucleus	50.09	44.62
CDX74811	Canola	nucleus	46.54	44.56
KRH31123	Soybean	nucleus	48.49	44.1
GSMUA_Achr5P28870_001	Banana	cytosol	53.64	42.72
PGSC0003DMT400021880	Potato	nucleus	40.32	42.43
KRH14961	Soybean	nucleus	49.73	41.92
TraesCS3A01G055100.2	Wheat	cytosol	50.09	41.05
Solyc09g014490.2.1	Tomato	nucleus	38.9	40.93
AT3G09000.1	Thale cress	nucleus	38.37	39.93
CDY53090	Canola	nucleus	35.88	39.61
Bra034046.1-P	Field mustard	nucleus	36.06	39.42
KRH73177	Soybean	nucleus	48.13	39.16
Bra029739.1-P	Field mustard	nucleus	36.41	38.75
PGSC0003DMT400031154	Potato	nucleus	28.77	38.66
CDY44674	Canola	nucleus	36.23	38.56
PGSC0003DMT400069902	Potato	cytosol	10.66	37.74
CDY22176	Canola	nucleus	34.46	37.6
AT5G01280.1	Thale cress	mitochondrion, nucleus	29.84	34.71
PGSC0003DMT400031157	Potato	nucleus	9.41	34.19
Bra028894.1-P	Field mustard	nucleus	30.73	34.19
CDY55901	Canola	nucleus	30.73	34.19
CDY48118	Canola	nucleus	30.37	33.79
AT2G38160.3	Thale cress	nucleus	17.41	30.62
CDX93325	Canola	nucleus	17.23	29.22
CDY18403	Canola	nucleus	17.41	25.65
Bra017135.1-P	Field mustard	nucleus	17.41	25.65
GSMUA_Achr10P...	Banana	mitochondrion	11.55	23.9
GSMUA_Achr3P09700_001	Banana	cytosol	19.89	23.43
GSMUA_Achr6P25180_001	Banana	cytosol	22.38	21.72
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	14.21	16.29
GSMUA_Achr2P20960_001	Banana	nucleus	17.94	10.13
GSMUA_Achr3P17040_001	Banana	nucleus	18.12	9.46
GSMUA_Achr6P12380_001	Banana	nucleus	17.41	8.28

Protein Annotations

EnsemblPlants:GSMUA_Achr10P00690_001	EnsemblPlants:GSMUA_Achr10T00690_001	EnsemblPlantsGene:GSMUA_Achr10G00690_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00029487C6	UniProt:M0RE96
MapMan:35.2	:	:	:	:	:

Description

retrotransposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G00690_001]

Coordinates

chr10:-:1235229..1240204

Molecular Weight (calculated)

59872.9 Da

IEP (calculated)

11.826

GRAVY (calculated)

-0.543

Length

563 amino acids

Sequence
(BLAST)

001: MRKLEKQRNN LLLHNAGELD PPFGSKPGTA PIFKVTSSAP SRKTGIDDFL NSDSDKNDYD WLLTPPGTPL FPSLETESKR TPIGSTVTPK ARPTVLKSRK
101: VMQLLDNHLP SILFCLLYDK QINIKTGFHL IFIFSNFSTY LTKSISSTFF TSIAMISSML MFFCNLILYF QLANASDPSR STLVPRQPAS SSGLNSGVGT
201: RRPSSSGGPT HSSSRPATPT GRSTIPAVSK PTRPSTPPSR TTVPAKSSAP LPRSSTPVRS STPTSRPSVL AASKPSSRSA TPTRRPSAPS TVPSSSAPSS
301: RSSSVTRSGP TISKSSAPSH GTSPITKPRP LKASDIPGFS LDAPSNLRTS LPERPSSATR GRPGAPSSRS SSIEPGPSIR PRRQSCSPSR GRAPNGNVKG
401: SSVPPPSRQH SNGGDKLNPV VIGNKMVERI VNMRRLAPPK QDDHRSTHNN LSGKSSLSPD STGFGRTLSK KSLDMALRHM DIRRSVPNSL RPLMANIPAS
501: SAFGVRSGPT RSRAISVSDS PLATSSTASS EQSVNNNIIC LEIEDDLTSE KGGRCPAAVS NVR

Best Arabidopsis Sequence Match ( AT2G40070.2 )
(BLAST)

001: MRRREKEQDN LLLNNNPDEF ETPLGSKHGT SPVFNISSGA PPSRKAAPDD FLNSEGDKND YEWLLTPPGT PLFPSLEMES HRTMMSQTGD SKSRPATLTS
101: RLANSSTESA ARNHLTSRQQ TSSPGLSSSS GASRRPSSSG GPGSRPATPT GRSSTLTANS KSSRPSTPTS RATVSSATRP SLTNSRSTVS ATTKPTPMSR
201: STSLSSSRLT PTASKPTTST ARSAGSVTRS TPSTTTKSAG PSRSTTPLSR STARSSTPTS RPTLPPSKTI SRSSTPTRRP IASASAATTT ANPTISQIKP
301: SSPAPAKPMP TPSKNPALSR AASPTVRSRP WKPSDMPGFS LETPPNLRTT LPERPLSATR GRPGAPSSRS GSVEPGGPPG GRPRRQSCSP SRGRAPMYSS
401: GSSVPAVNRG YSKASDNVSP VMMGTKMVER VINMRKLAPP RSDDKGSPHG NLSAKSSSPD SAGFGRTLSK KSLDMAIRHM DIRRTIPGNL RPLMTNIPAS
501: SMYSVRSGHT RGRPMNVSDS SPLATSSNAS SEISVCNNNG ICLEASEKED DAGSERGCRS PASLQGR

Arabidopsis Description

At2g40070 [Source:UniProtKB/TrEMBL;Acc:Q494P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.