Factsheet for Bra017135.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18403	Canola	nucleus	89.01	89.01
AT2G38160.3	Thale cress	nucleus	38.74	46.25
KRH00210	Soybean	nucleus	30.1	22.33
VIT_08s0007g02160.t01	Wine grape	nucleus	29.58	20.62
KRH49356	Soybean	nucleus	27.75	20.58
Bra034046.1-P	Field mustard	nucleus	26.96	20.0
PGSC0003DMT400021880	Potato	nucleus	27.49	19.63
Solyc09g014490.2.1	Tomato	nucleus	26.7	19.07
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	25.39	19.06
Bra029739.1-P	Field mustard	nucleus	25.13	18.15
Bra004992.1-P	Field mustard	nucleus	27.49	17.83
Zm00001d039901_P003	Maize	nucleus	27.75	17.67
EES02509	Sorghum	nucleus	27.75	17.67
GSMUA_Achr10P...	Banana	nucleus	25.65	17.41
Bra000164.1-P	Field mustard	nucleus	27.75	17.41
GSMUA_Achr8P02330_001	Banana	cytosol	27.23	17.39
Os01t0141900-01	Rice	nucleus	27.23	17.16
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	25.92	16.2
Bra028894.1-P	Field mustard	nucleus	21.2	16.01
TraesCS3D01G054400.1	Wheat	cytosol	26.44	16.01
TraesCS3B01G067400.1	Wheat	nucleus	26.44	15.98
TraesCS3A01G055100.2	Wheat	cytosol	27.49	15.28
GSMUA_Achr5P28870_001	Banana	cytosol	24.87	13.44
Bra001348.1-P	Field mustard	nucleus	18.32	12.94
Bra029708.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	17.28	11.66
Bra010916.1-P	Field mustard	nucleus	12.04	4.28
Bra032851.1-P	Field mustard	nucleus	12.3	4.17

Protein Annotations

EnsemblPlants:Bra017135.1	EnsemblPlants:Bra017135.1-P	EnsemblPlantsGene:Bra017135	InterPro:A1-4-GlycosylTfrase_dom	PANTHER:PTHR12042	PANTHER:PTHR12042:SF18
PFAM:PF04572	SEG:seg	UniParc:UPI0002544805	UniProt:M4DKV4	MapMan:50.2.4	:

Description

AT2G38160 (E=1e-057) | unknown protein

Coordinates

chrA04:-:16420930..16423950

Molecular Weight (calculated)

42494.5 Da

IEP (calculated)

10.648

GRAVY (calculated)

-0.665

Length

382 amino acids

Sequence
(BLAST)

001: MRRREKVQGV FSLSEPGTNS VEETTTESLE STTTRYVHLR RSGIEKFLDS ENNKSDYEWL LAAPETGGEE EAQENSMVKL KQPKAARSTV LTPRVENIMQ
101: EPVTLNVKAF KKITRLDSST AVSKQSNTIA DSKTKSKPSR QTTPTPRTTV SSTRPTNSAC RTSSIKSNPR ASRSSSVGKS VPTAAKSTSL TIREIPARPV
201: SASRGRGYSS GGRSTGRSSK ISDDVNPVLM GTQMVERVVN MRKLPPPKHD DNNMNSGFGR TLSRSSLDMA MRHMFSSLKL LTNYTDIISL NDMTRLRNGI
301: GVQTLDQETK KWKTLNNAVM VFDPYHPLMR EFLHEYAATF NGNKWGYNSP CLVTKFIKRL GHKAEFNLTI FPPDAFLSSE LA

Best Arabidopsis Sequence Match ( AT2G38160.3 )
(BLAST)

001: MENVVVVRDG DEELSLFLEM RRREKLQGVS SLSQPGANSV EKTSTKSLEL LKTSCVKLRR SSVEKFLDSE NDKSDYEWLL AAPEITLLGG KENSMVKLKE
101: PKAKSTALKQ RVENIPQEPL TRSVKVSKPT PRTVSSKQAN TAAEVKPSIK PSRQATPTSR ATLPSTRLTN SAQKSNSESI TTSIKSNTRA SAFPRSSSVG
201: KSVSSAKCTT PKIPETRARP VSTSRSRVYS SGDRSTGRSK ISNDVNPVLM GTQMVERVVN MRKLPPPKHD DNTTLGFGRT LSRSSLDMAL RHMNIRHSVS
301: KNLRVTVSAS TNSMDKNESS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.2); Has 972 Blast hits to 731 proteins in 211 species: Archae - 0; Bacteria - 236; Metazoa - 194; Fungi - 201; Plants - 218; Viruses - 32; Other Eukaryotes /.../source: NCBI BLink). [Source:TAIR;Acc:AT2G38160]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.