Factsheet for AT5G01280.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028894.1-P	Field mustard	nucleus	46.9	44.86
CDY48118	Canola	nucleus	46.9	44.86
CDY55901	Canola	nucleus	46.9	44.86
AT3G09000.1	Thale cress	nucleus	43.18	38.63
VIT_08s0007g02160.t01	Wine grape	nucleus	38.22	33.76
KRH00210	Soybean	nucleus	35.54	33.4
AT2G40070.1	Thale cress	nucleus	41.74	33.28
KRH49356	Soybean	nucleus	34.71	32.62
GSMUA_Achr6P33750_001	Banana	cytosol, mitochondrion	33.88	32.22
Os01t0141900-01	Rice	nucleus	39.26	31.35
EES02509	Sorghum	nucleus	38.22	30.83
Zm00001d039901_P003	Maize	nucleus	38.02	30.67
HORVU3Hr1G010470.4	Barley	cytosol, nucleus	38.22	30.28
TraesCS3B01G067400.1	Wheat	nucleus	39.46	30.22
TraesCS3D01G054400.1	Wheat	cytosol	39.26	30.11
GSMUA_Achr10P...	Banana	nucleus	34.71	29.84
AT2G38160.3	Thale cress	nucleus	19.42	29.38
GSMUA_Achr8P02330_001	Banana	cytosol	35.74	28.93
TraesCS3A01G055100.2	Wheat	cytosol	40.08	28.24
PGSC0003DMT400021880	Potato	nucleus	29.55	26.73
Solyc09g014490.2.1	Tomato	nucleus	28.31	25.61
GSMUA_Achr5P28870_001	Banana	cytosol	32.85	22.49
AT3G08670.1	Thale cress	mitochondrion	25.21	21.52
AT1G27850.1	Thale cress	nucleus	16.74	7.06

Protein Annotations

MapMan:35.2	EntrezGene:831711	ProteinID:AED90322.2	ArrayExpress:AT5G01280	EnsemblPlantsGene:AT5G01280	RefSeq:AT5G01280
TAIR:AT5G01280	RefSeq:AT5G01280-TAIR-G	EnsemblPlants:AT5G01280.1	TAIR:AT5G01280.1	Unigene:At.33914	UniProt:F4K804
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005875
GO:GO:0008150	GO:GO:0009506	RefSeq:NP_001318449.1	PO:PO:0000084	PO:PO:0001016	PO:PO:0001017
PO:PO:0025281	PANTHER:PTHR31949	PANTHER:PTHR31949:SF1	UniParc:UPI000849450A	SEG:seg	:

Description

BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 /.../e: NCBI BLink). [Source:TAIR;Acc:AT5G01280]

Coordinates

chr5:-:113999..116411

Molecular Weight (calculated)

51706.6 Da

IEP (calculated)

11.758

GRAVY (calculated)

-0.948

Length

484 amino acids

Sequence
(BLAST)

001: MRRCEKRHRP TLLMESDNTS STTAMSSQQY PVRRTAGENL LYSDGEKSDY EWLVTPPGSP SRNVTNHLNA PDDNLMTLIS RLENYSKEES EHQTTSLHSS
101: SSVSGIRRPS SSSSSRSTSR PPTPTRKSKT PAKRPSTPTS RATSTTTRAT LTSSSTTSST RSWSRPSSSS GTGTSRVTLT AARATRPTTS TDQQTTGSAT
201: STRSNNRPMS APNSKPGSRS STPTRRPSTP NGSSTVLRSK PTKPLSKPAL SLEASPIVRS RPWEPYEMPG FSVEAPSNLR TTLPDRPQTA SSSRTRAFDA
301: SSSSRSASTE RDVAKRQSCS PSRSRAPNGN VNGAVPSLRG QRAKTNNDDG RLISHAAKGN QKVEKVVNMR KLATPRLTES GSRRLGGGGG DSSAGKSSSG
401: SGGFGFGRNL SKSSIDMALR HMDVRKGSMA GNFRHSVTKA PATSVYSVRS CRNRPVSSSR SSESSVNILC LDGSDDNLSD MSCS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.