Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029739.1-P | Field mustard | nucleus | 72.27 | 73.91 |
| CDY44674 | Canola | nucleus | 72.09 | 73.72 |
| Bra034046.1-P | Field mustard | nucleus | 67.84 | 71.26 |
| CDY53090 | Canola | nucleus | 64.69 | 68.63 |
| CDY22176 | Canola | nucleus | 65.06 | 68.22 |
| KRH49356 | Soybean | nucleus | 41.77 | 43.88 |
| KRH00210 | Soybean | nucleus | 41.22 | 43.3 |
| AT5G01280.1 | Thale cress | mitochondrion, nucleus | 38.63 | 43.18 |
| GSMUA_Achr6P33750_001 | Banana | cytosol, mitochondrion | 38.63 | 41.06 |
| VIT_08s0007g02160.t01 | Wine grape | nucleus | 41.59 | 41.06 |
| EES02509 | Sorghum | nucleus | 44.73 | 40.33 |
| Os01t0141900-01 | Rice | nucleus | 45.1 | 40.26 |
| Zm00001d039901_P003 | Maize | nucleus | 44.36 | 40.0 |
| AT2G40070.1 | Thale cress | nucleus | 43.99 | 39.21 |
| GSMUA_Achr10P... | Banana | nucleus | 39.93 | 38.37 |
| GSMUA_Achr8P02330_001 | Banana | cytosol | 41.22 | 37.29 |
| HORVU3Hr1G010470.4 | Barley | cytosol, nucleus | 41.22 | 36.5 |
| TraesCS3D01G054400.1 | Wheat | cytosol | 41.4 | 35.5 |
| TraesCS3B01G067400.1 | Wheat | nucleus | 41.22 | 35.28 |
| AT2G38160.3 | Thale cress | nucleus | 20.52 | 34.69 |
| TraesCS3A01G055100.2 | Wheat | cytosol | 41.96 | 33.04 |
| PGSC0003DMT400021880 | Potato | nucleus | 32.35 | 32.71 |
| Solyc09g014490.2.1 | Tomato | nucleus | 32.35 | 32.71 |
| GSMUA_Achr5P28870_001 | Banana | cytosol | 35.12 | 26.87 |
| AT3G08670.1 | Thale cress | mitochondrion | 24.4 | 23.28 |
| AT1G27850.1 | Thale cress | nucleus | 18.67 | 8.8 |
Protein Annotations
| MapMan:35.2 | EntrezGene:820052 | UniProt:A0A178VA76 | ProteinID:AAD56316.1 | ProteinID:AAF07827.1 | ProteinID:AEE74707.1 |
| EMBL:AF428276 | ArrayExpress:AT3G09000 | EnsemblPlantsGene:AT3G09000 | RefSeq:AT3G09000 | TAIR:AT3G09000 | RefSeq:AT3G09000-TAIR-G |
| EnsemblPlants:AT3G09000.1 | TAIR:AT3G09000.1 | Unigene:At.18395 | EMBL:BT000745 | EMBL:BT020359 | GO:GO:0003674 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0005875 | GO:GO:0008150 |
| RefSeq:NP_566340.1 | ProteinID:OAP02558.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF1 | UniProt:Q9S7V5 | UniParc:UPI00000AC0C9 |
| SEG:seg | : | : | : | : | : |
Description
AT3g09000/T16O11_4 [Source:UniProtKB/TrEMBL;Acc:Q9S7V5]
Coordinates
chr3:+:2745534..2748525
Molecular Weight (calculated)
56816.9 Da
IEP (calculated)
11.846
GRAVY (calculated)
-0.796
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTHDRDEEL SLFLEMRRRE KEHRADSLLT GSDNVSINAT LTAAAAAALS GVSETASSQR YPLRRTAAEN FLYSENEKSD YDWLLTPPGT PQFEKESHRS
101: VMNQHDAPNS RPTVLKSRLG NCREDIVSGN NNKPQTSSSS VAGLRRPSSS GSSRSTSRPA TPTRRSTTPT TSTSRPVTTR ASNSRSSTPT SRATLTAARA
201: TTSTAAPRTT TTSSGSARSA TPTRSNPRPS SASSKKPVSR PATPTRRPST PTGPSIVSSK APSRGTSPSP TVNSLSKAPS RGTSPSPTLN SSRPWKPPEM
301: PGFSLEAPPN LRTTLADRPV SASRGRPGVA SAPGSRSGSI ERGGGPTSGG SGNARRQSCS PSRGRAPIGN TNGSLTGVRG RAKASNGGSG CDNLSPVAMG
401: NKMVERVVNM RKLGPPRLTE NGGRGSGKSS SAFNSLGYGR NLSKSSIDMA IRHMDIRRGM TGNLRPLVTK VPASSMYSVR SRPGSVSSSP VATSSTVSSS
501: DPSVDNINIL CLDGNEAEND DLLSERSYAA SPRNQYPKFT S
101: VMNQHDAPNS RPTVLKSRLG NCREDIVSGN NNKPQTSSSS VAGLRRPSSS GSSRSTSRPA TPTRRSTTPT TSTSRPVTTR ASNSRSSTPT SRATLTAARA
201: TTSTAAPRTT TTSSGSARSA TPTRSNPRPS SASSKKPVSR PATPTRRPST PTGPSIVSSK APSRGTSPSP TVNSLSKAPS RGTSPSPTLN SSRPWKPPEM
301: PGFSLEAPPN LRTTLADRPV SASRGRPGVA SAPGSRSGSI ERGGGPTSGG SGNARRQSCS PSRGRAPIGN TNGSLTGVRG RAKASNGGSG CDNLSPVAMG
401: NKMVERVVNM RKLGPPRLTE NGGRGSGKSS SAFNSLGYGR NLSKSSIDMA IRHMDIRRGM TGNLRPLVTK VPASSMYSVR SRPGSVSSSP VATSSTVSSS
501: DPSVDNINIL CLDGNEAEND DLLSERSYAA SPRNQYPKFT S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.