Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G302000.1 | Wheat | nucleus | 83.36 | 86.76 |
| KXG22223 | Sorghum | nucleus | 63.58 | 70.19 |
| Zm00001d038489_P001 | Maize | nucleus | 59.65 | 65.74 |
| Os05t0480600-01 | Rice | cytosol | 60.44 | 65.25 |
| Zm00001d010620_P001 | Maize | nucleus | 57.46 | 63.43 |
| TraesCS3B01G374300.1 | Wheat | nucleus | 50.71 | 58.51 |
| GSMUA_Achr6P25180_001 | Banana | cytosol | 38.62 | 42.41 |
| PGSC0003DMT400005965 | Potato | nucleus | 31.87 | 35.93 |
| Solyc06g054690.2.1 | Tomato | nucleus | 31.71 | 35.82 |
| KRH00491 | Soybean | mitochondrion, nucleus | 32.81 | 35.73 |
| KRH40665 | Soybean | nucleus | 32.03 | 34.81 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 25.9 | 33.6 |
| VIT_08s0056g00640.t01 | Wine grape | nucleus | 29.83 | 33.33 |
| AT3G08670.1 | Thale cress | mitochondrion | 29.04 | 32.63 |
| KRH09557 | Soybean | mitochondrion | 24.8 | 31.92 |
| CDY00658 | Canola | nucleus | 26.84 | 31.67 |
| Bra029708.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 28.1 | 31.63 |
| CDX73938 | Canola | nucleus | 26.53 | 31.3 |
| KRH64866 | Soybean | cytosol | 22.14 | 31.06 |
| Bra001348.1-P | Field mustard | nucleus | 25.43 | 29.94 |
| CDY27987 | Canola | nucleus | 28.26 | 29.56 |
| CDY35995 | Canola | nucleus | 27.94 | 29.32 |
| TraesCS3B01G067400.1 | Wheat | nucleus | 20.41 | 20.57 |
| TraesCS5B01G121900.1 | Wheat | nucleus | 14.44 | 7.79 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G311900.2 | EnsemblPlantsGene:TraesCS1B01G311900 | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF5 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr1B:-:535546128..535549860
Molecular Weight (calculated)
67057.6 Da
IEP (calculated)
12.111
GRAVY (calculated)
-0.804
Length
637 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDLLDAEIG KNDYDWLLTP PGTPRVPALE VAQKIPSSNI LPKRTLTRSS STTRASRLSV SQTENGHSAV PTRPARSNSV TRPSIQSTLM SSNNRTSVLN
101: ASISSVSSRP TTPSRRSSTI AAPKQLVPAS RPVPARSSTP VKARPSTPSK TRPSTPVKTH QTTSNSTTDA AAGRTTATQS SRPSTPNSRS RIMLNSSSGS
201: IPAMSRPSPS IGIIPATSRA GASSSNGHGT SHSTSLSSGT VPSVSRSTSR SSTPTRQPAV RSSAPAMGRS PSFGRTSSSH SLTTSMNRPA ASSVRSSAPS
301: SAPSSRPSSP GPRPRAPVRT HDIPSSAPSS RPSSPGPRPR APVRPHDTPS SAPSSRPSSP SPRPRAPVRP LDIPDFPNET PPNLRTKLPE RPLSAGRSRP
401: GMASGIRSNP HAEQLAASAP AKKLSVPAAS RNKFSDPPSK APSRSNGHQN RQSERSVVDS QATRTARAGA VAGDNGFGRT ISKNSLDMAI KHMDIRQNLG
501: GIRGASLFPH SIRSSAGKVR PVRMSDPGHP TLNGDHPHYA DNGSTNGHFF SGDSYGAVSR NGGSSTDSPD RGSFGTKETS LSELDIYGSS RYEAMLLRGE
601: DVRNTSWLHG GFDDDKPDQS PLFDHRFEPL PEPFSPF
101: ASISSVSSRP TTPSRRSSTI AAPKQLVPAS RPVPARSSTP VKARPSTPSK TRPSTPVKTH QTTSNSTTDA AAGRTTATQS SRPSTPNSRS RIMLNSSSGS
201: IPAMSRPSPS IGIIPATSRA GASSSNGHGT SHSTSLSSGT VPSVSRSTSR SSTPTRQPAV RSSAPAMGRS PSFGRTSSSH SLTTSMNRPA ASSVRSSAPS
301: SAPSSRPSSP GPRPRAPVRT HDIPSSAPSS RPSSPGPRPR APVRPHDTPS SAPSSRPSSP SPRPRAPVRP LDIPDFPNET PPNLRTKLPE RPLSAGRSRP
401: GMASGIRSNP HAEQLAASAP AKKLSVPAAS RNKFSDPPSK APSRSNGHQN RQSERSVVDS QATRTARAGA VAGDNGFGRT ISKNSLDMAI KHMDIRQNLG
501: GIRGASLFPH SIRSSAGKVR PVRMSDPGHP TLNGDHPHYA DNGSTNGHFF SGDSYGAVSR NGGSSTDSPD RGSFGTKETS LSELDIYGSS RYEAMLLRGE
601: DVRNTSWLHG GFDDDKPDQS PLFDHRFEPL PEPFSPF
001: MNRNLRESLA GGRNIPAISQ FRRGNNNNSN NISQNGFSRD SDENLDLFSK IRRSFPLASS DELPDVSAKL GRLSVGSKIA PKGKDDLLSS AEGGKNDYDW
101: LLTPPGTPLG NDSHSSLAAP KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL NTSSASVSSY IRPSSPSSRS
201: SSSARPSTPT RTSSASRSST PSRIRPGSSS SSMDKARPSL SSRPSTPTSR PQLSASSPNI IASRPNSRPS TPTRRSPSST SLSATSGPTI SGGRAASNGR
301: TGPSLSRPSS PGPRVRNTPQ QPIVLADFPL DTPPNLRTSL PDRPISAGRS RPVGGSSMAK ASPEPKGPIT RRNSSPIVTR GRLTETQGKG RFGGNGQHLT
401: DAPEPRRISN VSDITSRRTV KTSTTVTDNN NGLGRSFSKS SLDMAIRHMD IRNGKTNGCA LSTTTLFPQS IRPASSKIQP IRSGNNHSDS ISSNGTENGN
501: EANEGRRLMG KLSDMDMYES SRYDALLLKE DVKNTNWLHS IDDRSSDHGL MFDNGGFELL PEPFAPL
101: LLTPPGTPLG NDSHSSLAAP KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL NTSSASVSSY IRPSSPSSRS
201: SSSARPSTPT RTSSASRSST PSRIRPGSSS SSMDKARPSL SSRPSTPTSR PQLSASSPNI IASRPNSRPS TPTRRSPSST SLSATSGPTI SGGRAASNGR
301: TGPSLSRPSS PGPRVRNTPQ QPIVLADFPL DTPPNLRTSL PDRPISAGRS RPVGGSSMAK ASPEPKGPIT RRNSSPIVTR GRLTETQGKG RFGGNGQHLT
401: DAPEPRRISN VSDITSRRTV KTSTTVTDNN NGLGRSFSKS SLDMAIRHMD IRNGKTNGCA LSTTTLFPQS IRPASSKIQP IRSGNNHSDS ISSNGTENGN
501: EANEGRRLMG KLSDMDMYES SRYDALLLKE DVKNTNWLHS IDDRSSDHGL MFDNGGFELL PEPFAPL
Arabidopsis Description
At3g08670 [Source:UniProtKB/TrEMBL;Acc:Q9C9Y9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.