Factsheet for VIT_08s0056g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00491	Soybean	mitochondrion, nucleus	59.65	58.12
KRH40665	Soybean	nucleus	59.47	57.85
AT3G08670.1	Thale cress	mitochondrion	54.56	54.85
CDY00658	Canola	nucleus	49.82	52.59
PGSC0003DMT400005965	Potato	nucleus	52.11	52.57
Solyc06g054690.2.1	Tomato	nucleus	51.93	52.48
CDX73938	Canola	nucleus	48.77	51.48
Bra001348.1-P	Field mustard	nucleus	47.54	50.09
Bra029708.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	48.42	48.76
CDY35995	Canola	nucleus	48.6	45.63
KRH09557	Soybean	mitochondrion	38.95	44.85
CDY27987	Canola	nucleus	47.89	44.83
GSMUA_Achr6P25180_001	Banana	cytosol	40.7	40.0
KRH64866	Soybean	cytosol	30.88	38.77
GSMUA_Achr3P09700_001	Banana	cytosol	32.11	38.28
Zm00001d038489_P001	Maize	nucleus	35.09	34.6
Zm00001d043074_P001	Maize	cytosol	33.16	34.18
TraesCS3D01G336100.1	Wheat	nucleus	32.98	34.06
KXG22223	Sorghum	nucleus	34.39	33.97
TraesCS3A01G342200.1	Wheat	nucleus	32.81	33.88
HORVU3Hr1G080730.1	Barley	nucleus	32.46	33.64
Zm00001d010620_P001	Maize	nucleus	34.04	33.62
Zm00001d012515_P002	Maize	nucleus	32.46	33.58
TraesCS3B01G374300.1	Wheat	nucleus	32.46	33.51
EES01661	Sorghum	nucleus	32.63	33.45
Os05t0480600-01	Rice	cytosol	33.86	32.71
Os01t0819000-02	Rice	nucleus	31.93	31.43
TraesCS1A01G302000.1	Wheat	nucleus	33.68	31.37
TraesCS1B01G311900.2	Wheat	nucleus	33.33	29.83
VIT_13s0067g00570.t01	Wine grape	nucleus	26.14	27.34
VIT_08s0007g02160.t01	Wine grape	nucleus	24.56	25.55
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	21.4	24.85
VIT_01s0010g02610.t01	Wine grape	nucleus	18.42	8.87

Protein Annotations

EntrezGene:100267210	wikigene:100267210	MapMan:35.2	UniProt:A5AFP6	EMBL:AM425555	ProteinID:CAN71240
ProteinID:CAN71240.1	ProteinID:CBI31170	ProteinID:CBI31170.3	EMBL:FN595995	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	EntrezGene:LOC100267210	wikigene:LOC100267210	PANTHER:PTHR31949	PANTHER:PTHR31949:SF2	UniParc:UPI000151E669
ArrayExpress:VIT_08s0056g00640	EnsemblPlantsGene:VIT_08s0056g00640	EnsemblPlants:VIT_08s0056g00640.t01	unigene:Vvi.15589	RefSeq:XP_002266425	RefSeq:XP_002266425.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:911086..917350

Molecular Weight (calculated)

60728.1 Da

IEP (calculated)

11.658

GRAVY (calculated)

-0.846

Length

570 amino acids

Sequence
(BLAST)

001: MNRSFKESPA GPRTIPAVSH HRRGRSLTGM PRDADENLDL FSRNRRTLSV VSSEESEVPL KLGRLSVGSA KLARSGMDDL LSSVEGGKHD YDWLLTPPGT
101: PLFPSSDGNE SQPTMLAPRN SNLARSASTT KASRLSVAQS ESSYSRPTRS SSVTRPSIST SQYSTYSSSR SSSILNTSSA SVSSYTRPSS PITRSSSTAR
201: PSTPSARPTS SRSSTPSRAR PGLTSSSIDK PRPSPNSRPT TPSSRPQLQA NLSSPAARSN SRPSTPTRRT PAASLSPTAG PSPSTARAMS NGRNPAPASR
301: PSSPSPRVRN PPQPIVLPDF PLDTPPNLRT TLPDRPLSAG RSRPGAAMTM KGNSETPTRR QSSPIVTRGR VSEPNARGRL HSNGHVADSP ESRKASHVTE
401: PSRKPVKTST TSSESTGFGR TISKKSLDMA IRHMDIRNGT GSIRPLSGTT LFPQSIRSAA SKTQSARASS ASSAPASVNS NGSLPASNNG VPSENGNYFT
501: RPSENGAEED DGRFSAKLNQ TDIYESSRYD AILLKEDLKN TNWLHSVDKS DQGPIFDNGF EQLPEPFGLL

Best Arabidopsis Sequence Match ( AT3G08670.1 )
(BLAST)

001: MNRNLRESLA GGRNIPAISQ FRRGNNNNSN NISQNGFSRD SDENLDLFSK IRRSFPLASS DELPDVSAKL GRLSVGSKIA PKGKDDLLSS AEGGKNDYDW
101: LLTPPGTPLG NDSHSSLAAP KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL NTSSASVSSY IRPSSPSSRS
201: SSSARPSTPT RTSSASRSST PSRIRPGSSS SSMDKARPSL SSRPSTPTSR PQLSASSPNI IASRPNSRPS TPTRRSPSST SLSATSGPTI SGGRAASNGR
301: TGPSLSRPSS PGPRVRNTPQ QPIVLADFPL DTPPNLRTSL PDRPISAGRS RPVGGSSMAK ASPEPKGPIT RRNSSPIVTR GRLTETQGKG RFGGNGQHLT
401: DAPEPRRISN VSDITSRRTV KTSTTVTDNN NGLGRSFSKS SLDMAIRHMD IRNGKTNGCA LSTTTLFPQS IRPASSKIQP IRSGNNHSDS ISSNGTENGN
501: EANEGRRLMG KLSDMDMYES SRYDALLLKE DVKNTNWLHS IDDRSSDHGL MFDNGGFELL PEPFAPL

Arabidopsis Description

At3g08670 [Source:UniProtKB/TrEMBL;Acc:Q9C9Y9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.