Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G311900.2 | Wheat | nucleus | 86.76 | 83.36 |
| KXG22223 | Sorghum | nucleus | 66.99 | 71.06 |
| Zm00001d038489_P001 | Maize | nucleus | 64.05 | 67.82 |
| Os05t0480600-01 | Rice | cytosol | 65.36 | 67.8 |
| Zm00001d010620_P001 | Maize | nucleus | 60.46 | 64.12 |
| TraesCS3A01G342200.1 | Wheat | nucleus | 54.25 | 60.14 |
| GSMUA_Achr6P25180_001 | Banana | cytosol | 40.69 | 42.93 |
| KRH00491 | Soybean | mitochondrion, nucleus | 34.31 | 35.9 |
| PGSC0003DMT400005965 | Potato | nucleus | 32.35 | 35.04 |
| Solyc06g054690.2.1 | Tomato | nucleus | 32.19 | 34.93 |
| KRH40665 | Soybean | nucleus | 33.33 | 34.81 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 27.12 | 33.81 |
| VIT_08s0056g00640.t01 | Wine grape | nucleus | 31.37 | 33.68 |
| AT3G08670.1 | Thale cress | mitochondrion | 30.39 | 32.8 |
| Bra029708.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 30.23 | 32.69 |
| KRH09557 | Soybean | mitochondrion | 25.98 | 32.12 |
| CDY00658 | Canola | nucleus | 27.78 | 31.48 |
| CDX73938 | Canola | nucleus | 27.78 | 31.48 |
| KRH64866 | Soybean | cytosol | 23.2 | 31.28 |
| Bra001348.1-P | Field mustard | nucleus | 26.8 | 30.31 |
| CDY27987 | Canola | nucleus | 30.07 | 30.21 |
| CDY35995 | Canola | nucleus | 29.9 | 30.15 |
| TraesCS3A01G055100.2 | Wheat | cytosol | 21.9 | 19.51 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G302000.1 | EnsemblPlantsGene:TraesCS1A01G302000 | PANTHER:PTHR31949 | PANTHER:PTHR31949:SF5 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr1A:-:496071376..496075116
Molecular Weight (calculated)
64410.5 Da
IEP (calculated)
12.074
GRAVY (calculated)
-0.818
Length
612 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDLLDAEIG KNDYDWLLTP PGTPRVPALE VAQKIPSSNI LPKRTLTRSS STTRASRLSV SQTENGHSAV PTRPARSNSV TRPSIQSTLM SSNNRTSVLS
101: ASISSVSSRP TTPSRRSSTI AAPKQLVPAS RPVPARSSTP VKPRPSTPSK TRPSTPVKTH QATSNSATDA AAGRTTATQS SRPSTPNSRS RIMLNSSSGS
201: IPAMSRPSPS VGIIPATSRP GASSSNGHGT SHPTSLSSGT VPSVSRSSSR SSTPTRQPAV RSSTPAMGRS PSFGRTSSSN SLTTSMNRPA ASSGRSSAPS
301: SAPSSRPSSP GARPRAPVRP HDTPSSAPSS RPSSPSPRPR APVRPLDIPD FPNETPPNLR TKLPERPLSA GRSRPGMASG IRSNPHAEQL AASAPAKKLS
401: VPAASRNKFS DPPSKAPSRS NGHQNRQSER PVVDSQATRT ARTGAVAGDN GFGRTISKNS LDMAIKHMDI RQNLGGIRGA SLFPHSIRSS AGKARPVRMS
501: DPGHPTSNGD HRHYADNGST NGHFFSGDSY GALSRNGGSS TDSPDRGSFG TKETSLSELD IYGSSRYEAM LLRGEDVRNT SWLHGGFDDD KPDQSPLFDH
601: RFEPLPEPFS PF
101: ASISSVSSRP TTPSRRSSTI AAPKQLVPAS RPVPARSSTP VKPRPSTPSK TRPSTPVKTH QATSNSATDA AAGRTTATQS SRPSTPNSRS RIMLNSSSGS
201: IPAMSRPSPS VGIIPATSRP GASSSNGHGT SHPTSLSSGT VPSVSRSSSR SSTPTRQPAV RSSTPAMGRS PSFGRTSSSN SLTTSMNRPA ASSGRSSAPS
301: SAPSSRPSSP GARPRAPVRP HDTPSSAPSS RPSSPSPRPR APVRPLDIPD FPNETPPNLR TKLPERPLSA GRSRPGMASG IRSNPHAEQL AASAPAKKLS
401: VPAASRNKFS DPPSKAPSRS NGHQNRQSER PVVDSQATRT ARTGAVAGDN GFGRTISKNS LDMAIKHMDI RQNLGGIRGA SLFPHSIRSS AGKARPVRMS
501: DPGHPTSNGD HRHYADNGST NGHFFSGDSY GALSRNGGSS TDSPDRGSFG TKETSLSELD IYGSSRYEAM LLRGEDVRNT SWLHGGFDDD KPDQSPLFDH
601: RFEPLPEPFS PF
001: MNRNLRESLA GGRNIPAISQ FRRGNNNNSN NISQNGFSRD SDENLDLFSK IRRSFPLASS DELPDVSAKL GRLSVGSKIA PKGKDDLLSS AEGGKNDYDW
101: LLTPPGTPLG NDSHSSLAAP KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL NTSSASVSSY IRPSSPSSRS
201: SSSARPSTPT RTSSASRSST PSRIRPGSSS SSMDKARPSL SSRPSTPTSR PQLSASSPNI IASRPNSRPS TPTRRSPSST SLSATSGPTI SGGRAASNGR
301: TGPSLSRPSS PGPRVRNTPQ QPIVLADFPL DTPPNLRTSL PDRPISAGRS RPVGGSSMAK ASPEPKGPIT RRNSSPIVTR GRLTETQGKG RFGGNGQHLT
401: DAPEPRRISN VSDITSRRTV KTSTTVTDNN NGLGRSFSKS SLDMAIRHMD IRNGKTNGCA LSTTTLFPQS IRPASSKIQP IRSGNNHSDS ISSNGTENGN
501: EANEGRRLMG KLSDMDMYES SRYDALLLKE DVKNTNWLHS IDDRSSDHGL MFDNGGFELL PEPFAPL
101: LLTPPGTPLG NDSHSSLAAP KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL NTSSASVSSY IRPSSPSSRS
201: SSSARPSTPT RTSSASRSST PSRIRPGSSS SSMDKARPSL SSRPSTPTSR PQLSASSPNI IASRPNSRPS TPTRRSPSST SLSATSGPTI SGGRAASNGR
301: TGPSLSRPSS PGPRVRNTPQ QPIVLADFPL DTPPNLRTSL PDRPISAGRS RPVGGSSMAK ASPEPKGPIT RRNSSPIVTR GRLTETQGKG RFGGNGQHLT
401: DAPEPRRISN VSDITSRRTV KTSTTVTDNN NGLGRSFSKS SLDMAIRHMD IRNGKTNGCA LSTTTLFPQS IRPASSKIQP IRSGNNHSDS ISSNGTENGN
501: EANEGRRLMG KLSDMDMYES SRYDALLLKE DVKNTNWLHS IDDRSSDHGL MFDNGGFELL PEPFAPL
Arabidopsis Description
At3g08670 [Source:UniProtKB/TrEMBL;Acc:Q9C9Y9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.