Factsheet for Solyc05g018520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20080.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT5G20080.1	Solyc10g006000.2.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g04970.t01	Wine grape	mitochondrion	74.92	74.23
KRH03716	Soybean	mitochondrion	69.97	70.85
KRH56619	Soybean	mitochondrion	70.59	70.59
AT5G20080.1	Thale cress	mitochondrion	71.21	70.12
EES00217	Sorghum	mitochondrion	66.25	68.81
TraesCS3B01G147600.1	Wheat	mitochondrion, unclear	65.33	68.28
TraesCS3D01G129500.1	Wheat	mitochondrion	65.33	68.28
Os01t0174300-01	Rice	mitochondrion	65.63	68.17
TraesCS3A01G128600.1	Wheat	mitochondrion	65.33	68.06
HORVU3Hr1G024170.3	Barley	mitochondrion	65.33	67.85
Zm00001d039656_P003	Maize	mitochondrion	65.33	67.85
GSMUA_Achr10P...	Banana	mitochondrion	66.87	65.26
Solyc10g081440.1.1	Tomato	extracellular, plastid	35.91	41.73
Solyc11g013810.1.1	Tomato	cytosol, nucleus	33.13	11.73

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0004128	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005794	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009628	GO:GO:0009651	GO:GO:0016491
GO:GO:0030312	GO:GO:0055114	InterPro:IPR017927	UniProt:K4BZA6	InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970	PRINTS:PR00371	PRINTS:PR00406	PFscan:PS51384
PANTHER:PTHR19370	PANTHER:PTHR19370:SF174	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:Solyc05g018520.2
EnsemblPlants:Solyc05g018520.2.1	UniParc:UPI00027673F2	SEG:seg	:	:	:

Description

NADH-cytochrome b5 reductase-like protein [Source:Projected from Arabidopsis thaliana (AT5G20080) UniProtKB/Swiss-Prot;Acc:P83291]

Coordinates

chr5:-:22136142..22152397

Molecular Weight (calculated)

35479.0 Da

IEP (calculated)

9.153

GRAVY (calculated)

-0.221

Length

323 amino acids

Sequence
(BLAST)

001: MAALLRKLAK AAPIAFRGDS KSNFADPRFP FGAIAAVAGC VSYYYCHSSA NLVYLEQISE DSGKKVALNP DKWIEFKLQD RAPVSHNSHL FRFSFDPSSK
101: LGLDIASCIL TRAPMGENAE GKPKYAIRPY TPISDPEAKG YFDLLIKVYP EGKMSQHFAK LKPGDILQVK GPIEKLHYSS NMKKHIGMIA GGSGITPMLQ
201: VIEAILKNPD DNTQVSLVYA NLSPDDILLK KKLDVLAATH PNLKVFYTVD NPTNDWRGGI GYVSKNMIVK GLPPPGDDTL ILVCGPPGMI RHLSGEKPNP
301: REQGELTGLL KDVGFTENMV YKF

Best Arabidopsis Sequence Match ( AT5G20080.1 )
(BLAST)

001: MATSFFRRLA RSAPITFPVA FGSQSKSGSG AFRFSTGAIA ALSGGFSYYY LTSGNNLVYL DQAKEETGPK TALNPDKWLE FKLQDTARVS HNTQLFRFSF
101: DPSAELGLHV ASCLLTRAPL GYNAEGKTKY VIRPYTPISD PEAKGYFDLL IKVYPDGKMS QHFASLKPGD VLEVKGPVEK FKYSPNMKKH IGMIAGGSGI
201: TPMLQVIDAI VKNPEDNTQI SLLYANVSPD DILLKQKLDV LQANHPNLKI FYTVDNPTKN WKGGVGYISK DMALKGLPLP TDDTLILVCG PPGMMEHISG
301: GKAPDWSQGE VKGILKELGY TEEMVFKF

Arabidopsis Description

CBR2NADH-cytochrome b5 reductase-like protein [Source:UniProtKB/Swiss-Prot;Acc:P83291]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.