Factsheet for VIT_13s0047g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 6
peroxisome 1
plastid 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g01710.t01	Wine grape	endoplasmic reticulum	66.44	69.78
VIT_08s0056g01150.t01	Wine grape	endoplasmic reticulum	63.7	67.15
KRH44741	Soybean	endoplasmic reticulum, peroxisome, plastid	66.1	64.98
KRH13184	Soybean	endoplasmic reticulum, peroxisome, plastid	65.41	64.31
VIT_11s0016g04970.t01	Wine grape	mitochondrion	44.52	39.88
VIT_18s0001g03910.t01	Wine grape	plastid	39.04	12.54

Protein Annotations

EntrezGene:100259177	wikigene:100259177	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	EMBL:AM475390
ProteinID:CAN75118	ProteinID:CAN75118.1	ProteinID:CCB52147	ProteinID:CCB52147.1	UniProt:F6HIY1	EMBL:FN595767
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004128	GO:GO:0005575
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0022900	GO:GO:0055114	InterPro:IPR017927	EntrezGene:LOC100259177	wikigene:LOC100259177
InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970	PRINTS:PR00371
PRINTS:PR00406	PFscan:PS51384	PANTHER:PTHR19370	PANTHER:PTHR19370:SF97	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343
SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI000198486D	ArrayExpress:VIT_13s0047g01190	EnsemblPlantsGene:VIT_13s0047g01190	EnsemblPlants:VIT_13s0047g01190.t01
RefSeq:XP_002271202	RefSeq:XP_002271202.1	SEG:seg	:	:	:

Description

NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:F6HIY1]

Coordinates

chr13:-:18236905..18251476

Molecular Weight (calculated)

32677.1 Da

IEP (calculated)

10.143

GRAVY (calculated)

-0.178

Length

292 amino acids

Sequence
(BLAST)

001: MWKMTSTLLP TFRVTWPLKT PGIELSGFAV GLAAVGLAAV YFFYGRRKPK GCLDPERFQD FKLVQKTRIS HNVGRFRFAL PTPTSVFGLP VGQHIICRGK
101: DDQGAEVIRP YTPITLDSDV GFYELVVKMY PKGQMSHHFR KMREGDTLAV KGPRGRLIYK PGQAKAFGML AGGTGITPMF QLTRAILENP KDKTNVHLIY
201: ANISYDDILL KDELDGFARK FPNRFKVFYV LSQPPEAWNG GIGHISKEMI EKHCPAPAPD IQILRCGPPG MNKAMAGHLV ALGYTPQMQF EF

Best Arabidopsis Sequence Match ( AT5G17770.1 )
(BLAST)

001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F

Arabidopsis Description

CBR1NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178US77]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.