Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G80650.1 | KXG19242 | AT1G19830.1 | 21798944 |
| AT1G80650.1 | EER88061 | AT2G47400.1 | 21798944 |
| AT1G80650.1 | EER94980 | AT2G47400.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005754_P001 | Maize | cytosol, peroxisome, plastid | 52.91 | 64.08 |
| Os09t0416500-01 | Rice | nucleus | 45.35 | 43.33 |
| TraesCS5D01G233400.1 | Wheat | cytosol | 33.14 | 32.95 |
| TraesCS5B01G224700.3 | Wheat | cytosol | 35.47 | 32.11 |
| CDY39957 | Canola | cytosol | 14.53 | 32.05 |
| TraesCS5A01G226200.1 | Wheat | cytosol | 33.72 | 30.69 |
| AT4G00420.4 | Thale cress | nucleus | 23.26 | 21.05 |
| KRH09670 | Soybean | plastid | 20.93 | 18.56 |
| CDY53218 | Canola | nucleus | 21.51 | 18.41 |
| Bra008448.1-P | Field mustard | nucleus | 21.51 | 18.32 |
| AT1G80650.1 | Thale cress | nucleus | 19.77 | 17.17 |
Protein Annotations
| EnsemblPlants:EER96734 | EnsemblPlantsGene:SORBI_3002G202000 | EntrezGene:8060250 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PFAM:PF14709 | PFscan:PS50137 |
| ProteinID:EER96734 | ProteinID:EER96734.1 | RefSeq:XP_002460213.1 | SUPFAM:SSF54768 | unigene:Sbi.5902 | UniParc:UPI0001A83B6D |
| UniProt:C5XCT9 | MapMan:16.10.1.4.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:59186499..59191611
Molecular Weight (calculated)
19093.8 Da
IEP (calculated)
8.610
GRAVY (calculated)
-0.702
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPPRKHKSS GVPVKEEVES EDGNDLVAKR RRTEVSGSII QLQQQIEVFG MENKAPAGLK VEDSTGKDPM DVLNSCAVQN SGQANGRSNE PASLRLLKIC
101: KVIGWKEPQF DFEEQGPQHN KTFKCKVTVH LDGLLNTIME CFSKPNPRKK AARENAAQGA LWCLQCSGYV RK
101: KVIGWKEPQF DFEEQGPQHN KTFKCKVTVH LDGLLNTIME CFSKPNPRKK AARENAAQGA LWCLQCSGYV RK
001: MDLPPPESSS NPISSFSVAQ KRMLLQRCES KFKIRKLNDT VEEDNVTQME PNFTLENTLV SEPEADLRPH TTEPTTEETQ RSSAKSQLYN LCSVRHWKAP
101: LYEYIAEGPC HMKIFTGKVT VEMKEDSRIT VLECFGNPQY KKKIAAEQAA EAALWYLKNV GYTLQTEKAS GRKGRSKPIS KMMVTGEPV
101: LYEYIAEGPC HMKIFTGKVT VEMKEDSRIT VLECFGNPQY KKKIAAEQAA EAALWYLKNV GYTLQTEKAS GRKGRSKPIS KMMVTGEPV
Arabidopsis Description
Double-stranded RNA-binding domain (DsRBD)-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JHB3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.