Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G226200.1 | Wheat | cytosol | 87.86 | 80.42 |
| TraesCS5B01G224700.3 | Wheat | cytosol | 86.13 | 78.42 |
| Os09t0416500-01 | Rice | nucleus | 41.04 | 39.44 |
| EER96734 | Sorghum | nucleus | 32.95 | 33.14 |
| CDY39957 | Canola | cytosol | 13.87 | 30.77 |
| Zm00001d020476_P001 | Maize | nucleus | 30.06 | 28.26 |
| Zm00001d020472_P001 | Maize | nucleus | 19.65 | 27.87 |
| Zm00001d005754_P001 | Maize | cytosol, peroxisome, plastid | 21.39 | 26.06 |
| AT4G00420.4 | Thale cress | nucleus | 20.23 | 18.42 |
| AT1G80650.1 | Thale cress | nucleus | 19.65 | 17.17 |
| CDY53218 | Canola | nucleus | 19.65 | 16.92 |
| Bra008448.1-P | Field mustard | nucleus | 19.65 | 16.83 |
| KRH09670 | Soybean | plastid | 18.5 | 16.49 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G233400.1 | EnsemblPlantsGene:TraesCS5D01G233400 | Gene3D:3.30.160.20 | PFAM:PF14709 | SUPFAM:SSF54768 | MapMan:16.10.1.4.2 |
Description
No Description!
Coordinates
chr5D:-:341024806..341029699
Molecular Weight (calculated)
18847.4 Da
IEP (calculated)
5.324
GRAVY (calculated)
-0.443
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPPVYQEPS IMPINTRTEK ELEEKEVLCT HKKPKATGCV AQLQQEIELA IESENKGHGD PSPKESACVV LSNGEANGCS EGHVLGGANA EPEARLRLAQ
101: LCSAIGWKSP TYEFEEHGHG HTKLFTCKVS VLVETFTDTV VECISEPKPQ KRAAEEQGAE GVLWTLKCLG HVK
101: LCSAIGWKSP TYEFEEHGHG HTKLFTCKVS VLVETFTDTV VECISEPKPQ KRAAEEQGAE GVLWTLKCLG HVK
001: MLLQRCESKF KIRKLNDTVE EDNVTQMEPN FTLENTLVSE PEADLRPHTT EPTTEEETQR SSAKSQLYNL CSVRHWKAPL YEYIAEGPCH MKIFTGKVTV
101: EMKEDSRITV LECFGNPQYK KKIAAEQAAE AALWYLKNVG YTLQTEKASG RKGRSKPISK MMVTGEPV
101: EMKEDSRITV LECFGNPQYK KKIAAEQAAE AALWYLKNVG YTLQTEKASG RKGRSKPISK MMVTGEPV
Arabidopsis Description
Double-stranded RNA-binding domain (DsRBD)-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JHB3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.