Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020472_P001 | Maize | nucleus | 54.35 | 81.97 |
| Zm00001d005754_P001 | Maize | cytosol, peroxisome, plastid | 47.28 | 61.27 |
| Os09t0416500-01 | Rice | nucleus | 40.76 | 41.67 |
| CDY39957 | Canola | cytosol | 16.85 | 39.74 |
| TraesCS5B01G224700.3 | Wheat | cytosol | 33.15 | 32.11 |
| TraesCS5A01G226200.1 | Wheat | cytosol | 31.52 | 30.69 |
| TraesCS5D01G233400.1 | Wheat | cytosol | 28.26 | 30.06 |
| AT4G00420.4 | Thale cress | nucleus | 22.83 | 22.11 |
| CDY53218 | Canola | nucleus | 23.37 | 21.39 |
| Bra008448.1-P | Field mustard | nucleus | 23.37 | 21.29 |
| AT1G80650.1 | Thale cress | nucleus | 22.28 | 20.71 |
| KRH09670 | Soybean | plastid | 21.2 | 20.1 |
Protein Annotations
| EMBL:BT034901 | EMBL:EU961365 | EnsemblPlants:Zm00001d020476_P001 | EnsemblPlants:Zm00001d020476_T001 | EnsemblPlantsGene:Zm00001d020476 | EntrezGene:100192817 |
| Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR014720 |
| InterPro:dsRBD_dom | PFAM:PF14709 | PFscan:PS50137 | ProteinID:ONM54979.1 | SUPFAM:SSF54768 | UniParc:UPI00017B67F5 |
| UniProt:B4FCR3 | MapMan:16.10.1.4.2 | : | : | : | : |
Description
Ribonuclease 3-like protein 1
Coordinates
chr7:-:117741049..117753622
Molecular Weight (calculated)
20350.1 Da
IEP (calculated)
7.341
GRAVY (calculated)
-0.655
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MESPRKHKAS AVPVKEKVKL EDGNDLLVKR RKTEFSGSIV QPEREIEVFD PENKVPDGLP VEYSTDKDPM DALTSCAVQN FGQAKGNTSA SSRLPKICKA
101: AGWKEPSFDF EEQGPPHNRI FTCKVTVHLD GLVNTIMECF SDPKPKKKAA RENAAQGALW CLERSGYVKS SSDVPDLCGH QPFC
101: AGWKEPSFDF EEQGPPHNRI FTCKVTVHLD GLVNTIMECF SDPKPKKKAA RENAAQGALW CLERSGYVKS SSDVPDLCGH QPFC
001: MLLQRCESKF KIRKLNDTVE EDNVTQMEPN FTLENTLVSE PEADLRPHTT EPTTEEETQR SSAKSQLYNL CSVRHWKAPL YEYIAEGPCH MKIFTGKVTV
101: EMKEDSRITV LECFGNPQYK KKIAAEQAAE AALWYLKNVG YTLQTEKASG RKGRSKPISK MMVTGEPV
101: EMKEDSRITV LECFGNPQYK KKIAAEQAAE AALWYLKNVG YTLQTEKASG RKGRSKPISK MMVTGEPV
Arabidopsis Description
Double-stranded RNA-binding domain (DsRBD)-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JHB3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.