Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39957 | Canola | cytosol | 21.72 | 55.13 |
| CDY53218 | Canola | nucleus | 48.48 | 47.76 |
| Bra008448.1-P | Field mustard | nucleus | 48.48 | 47.52 |
| Zm00001d020472_P001 | Maize | nucleus | 18.69 | 30.33 |
| AT4G00420.4 | Thale cress | nucleus | 27.78 | 28.95 |
| KRH09670 | Soybean | plastid | 27.78 | 28.35 |
| Zm00001d020476_P001 | Maize | nucleus | 20.71 | 22.28 |
| Os09t0416500-01 | Rice | nucleus | 20.2 | 22.22 |
| TraesCS5B01G224700.3 | Wheat | cytosol | 20.2 | 21.05 |
| EER96734 | Sorghum | nucleus | 17.17 | 19.77 |
| TraesCS5D01G233400.1 | Wheat | cytosol | 17.17 | 19.65 |
| TraesCS5A01G226200.1 | Wheat | cytosol | 18.69 | 19.58 |
| Zm00001d005754_P001 | Maize | cytosol, peroxisome, plastid | 8.08 | 11.27 |
Protein Annotations
| MapMan:16.10.1.4.2 | Gene3D:3.30.160.20 | EntrezGene:844404 | ProteinID:AAF27126.1 | ProteinID:AEE36432.1 | EMBL:AK117343 |
| ArrayExpress:AT1G80650 | EnsemblPlantsGene:AT1G80650 | RefSeq:AT1G80650 | TAIR:AT1G80650 | RefSeq:AT1G80650-TAIR-G | EnsemblPlants:AT1G80650.1 |
| TAIR:AT1G80650.1 | EMBL:BT005219 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR014720 | RefSeq:NP_178180.1 | PFAM:PF14709 | PO:PO:0000293 | PFscan:PS50137 | UniProt:Q9M8N2 |
| Symbol:RTL1 | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI000000C58B | InterPro:dsRBD_dom | SEG:seg |
Description
RTL1Ribonuclease 3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8N2]
Coordinates
chr1:+:30314522..30316002
Molecular Weight (calculated)
22619.9 Da
IEP (calculated)
8.734
GRAVY (calculated)
-0.902
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDQETKRIT KKPSRSIIIS LKDIPPLDPS SIPSMKPMAQ DHHNVGMQRF QEKTDFKFEE EDNAISSFSN IQIDPNSTRS ISLEKKLAPK PDEEHTTTTK
101: PISKDDESKT RRGSAKSVLH EMCASKRWRP PVYECCNVDG PCHLRLFTYK VMVEIRDSSG KTVLECFGDP RRKKKAAAEH AAEGALWYLE HVKTKPHQ
101: PISKDDESKT RRGSAKSVLH EMCASKRWRP PVYECCNVDG PCHLRLFTYK VMVEIRDSSG KTVLECFGDP RRKKKAAAEH AAEGALWYLE HVKTKPHQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.