Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020472_P001 | Maize | nucleus | 20.0 | 31.15 |
| AT1G80650.1 | Thale cress | nucleus | 28.95 | 27.78 |
| KRH09670 | Soybean | plastid | 25.79 | 25.26 |
| EER96734 | Sorghum | nucleus | 21.05 | 23.26 |
| Zm00001d020476_P001 | Maize | nucleus | 22.11 | 22.83 |
| Os09t0416500-01 | Rice | nucleus | 21.58 | 22.78 |
| TraesCS5A01G226200.1 | Wheat | cytosol | 20.53 | 20.63 |
| TraesCS5D01G233400.1 | Wheat | cytosol | 18.42 | 20.23 |
| TraesCS5B01G224700.3 | Wheat | cytosol | 20.0 | 20.0 |
| Zm00001d005754_P001 | Maize | cytosol, peroxisome, plastid | 11.05 | 14.79 |
Protein Annotations
| MapMan:16.10.1.4.2 | Gene3D:3.30.160.20 | EntrezGene:828061 | ProteinID:AEE81875.1 | ProteinID:ANM66100.1 | ProteinID:ANM66101.1 |
| ArrayExpress:AT4G00420 | EnsemblPlantsGene:AT4G00420 | RefSeq:AT4G00420 | TAIR:AT4G00420 | RefSeq:AT4G00420-TAIR-G | EnsemblPlants:AT4G00420.4 |
| UniProt:F4JHB3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008150 |
| InterPro:IPR014720 | RefSeq:NP_001328016.1 | RefSeq:NP_001328017.1 | RefSeq:NP_849275.1 | PFAM:PF14709 | PFscan:PS50137 |
| SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI0000196ADD | InterPro:dsRBD_dom | SEG:seg | : |
Description
Double-stranded RNA-binding domain (DsRBD)-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JHB3]
Coordinates
chr4:-:181267..184393
Molecular Weight (calculated)
21549.7 Da
IEP (calculated)
7.384
GRAVY (calculated)
-0.685
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLPPPESSS NPISSFSVAQ KRMLLQRCES KFKIRKLNDT VEEDNVTQME PNFTLENTLV SEPEADLRPH TTEPTTEEET QRSSAKSQLY NLCSVRHWKA
101: PLYEYIAEGP CHMKIFTGKV TVEMKEDSRI TVLECFGNPQ YKKKIAAEQA AEAALWYLKN VGYTLQTEKA SGRKGRSKPI SKMMVTGEPV
101: PLYEYIAEGP CHMKIFTGKV TVEMKEDSRI TVLECFGNPQ YKKKIAAEQA AEAALWYLKN VGYTLQTEKA SGRKGRSKPI SKMMVTGEPV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.