CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66319	Soybean	cytosol	81.63	81.63
KRH66322	Soybean	nucleus	79.3	79.53
KRH66321	Soybean	cytosol	79.01	79.01
KRH48965	Soybean	cytosol	57.43	75.77
CDX69408	Canola	cytosol	70.26	70.06
Bra008581.1-P	Field mustard	cytosol	70.26	70.06
KRH66318	Soybean	cytosol	26.53	70.0
KRH36166	Soybean	cytosol	50.44	69.2
AT5G16990.1	Thale cress	cytosol	68.8	68.8
Bra032019.1-P	Field mustard	cytosol	67.35	68.75
CDY28735	Canola	cytosol	68.8	68.41
CDY16966	Canola	cytosol	69.97	68.38
CDY43153	Canola	cytosol	68.51	68.31
AT5G17000.1	Thale cress	cytosol	68.51	68.12
AT5G16970.1	Thale cress	cytosol	68.22	67.83
AT1G26320.1	Thale cress	cytosol	69.39	67.81
AT3G03080.1	Thale cress	cytosol	68.8	67.43
CDY38077	Canola	cytosol	67.06	65.71
CDX78721	Canola	cytosol	67.93	65.63
Bra024723.1-P	Field mustard	cytosol	67.06	65.53
CDY16150	Canola	cytosol	67.06	65.53
CDX85479	Canola	cytosol	66.76	65.43
CDX85014	Canola	cytosol	66.76	65.24
AT5G16960.2	Thale cress	cytosol	65.6	65.03
Bra023591.1-P	Field mustard	cytosol	66.18	64.86
AT5G37980.1	Thale cress	plastid	65.31	63.46
AT5G16980.2	Thale cress	cytosol	55.69	62.62
AT5G37940.1	Thale cress	cytosol, peroxisome, plastid	64.43	62.61
KRH66323	Soybean	cytosol	62.97	62.43
KRH44857	Soybean	cytosol	31.78	62.29
AT3G59845.1	Thale cress	cytosol, golgi, peroxisome	62.39	61.85
KRH46910	Soybean	cytosol	40.82	61.4
AT5G38000.1	Thale cress	plastid	62.97	61.19
KRG90594	Soybean	mitochondrion	19.24	60.55
Bra007482.1-P	Field mustard	cytosol	61.81	60.06
CDY05974	Canola	cytosol	61.81	60.06
KRH01782	Soybean	nucleus	60.64	59.77
KRH66218	Soybean	cytosol	20.41	58.33
Bra006381.1-P	Field mustard	cytosol	67.35	53.35
KRG99608	Soybean	cytosol	28.57	50.78
CDX70729	Canola	golgi, plastid	68.22	49.47
KRH54972	Soybean	cytosol	44.9	44.51
KRH26780	Soybean	cytosol	40.52	39.71
KRH49605	Soybean	cytosol	12.54	36.75
KRH22573	Soybean	cytoskeleton, cytosol, peroxisome	38.48	36.26
KRH26779	Soybean	cytosol	37.61	35.64
KRH50260	Soybean	extracellular	18.08	29.81
KRH71155	Soybean	nucleus	31.78	17.22
KRG88432	Soybean	cytosol	6.12	8.27

Protein Annotations

EntrezGene:100809668	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	EMBL:ACUP02001938	InterPro:ADH_C
EMBL:BT097543	UniProt:C6TIQ5	EnsemblPlantsGene:GLYMA_03G097600	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	EnsemblPlants:KRH66306	ProteinID:KRH66306
ProteinID:KRH66306.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF16884	InterPro:PKS_ER	PANTHER:PTHR43205
PANTHER:PTHR43205:SF9	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI00018C65C9	:

Description

hypothetical protein

Coordinates

chr3:+:28531242..28535136

Molecular Weight (calculated)

37922.7 Da

IEP (calculated)

6.261

GRAVY (calculated)

-0.105

Length

343 amino acids

Sequence
(BLAST)

001: MAQVRNKQVL LKDYVTGFPK ESDMNIVEST ITLKLPQGSN DVLLKNLYLS CDPYMRNLMN RPEGPPNSRA YTPGSPLIGY GVSKVLESGH PDYKEGDLVW
101: GFTKWEEYSL LPSAQILFKI EHTDVPLTYY TGILGMPGVT AYAGLFEVGS LQKGENVFVS AASGAVGQLV GQFAKLNGCY VVGSAGSKEK VDLLTNKFGF
201: DGGFNYKEEP DLDAALKRHF PEGIDVYFEN VGGKTLDAVL LNMRVRGRIP VCGMISQYNL TQHEGVTNLA QIIYKRIRLQ GFNFMDFVHL YPKFLEFLLP
301: NIREGKVVYV EDIAEGLENG PSALVGLFSG RNVGKQVLVV SHE

Best Arabidopsis Sequence Match ( AT5G16990.1 )
(BLAST)

001: MTTNKQVIFK DHVSGFPKES DFNFTTTTVE LRVPEGSKSV LVKNLYLSCD PYMRSRMGKP DPSSALAQAY APGKPIYGYG VSRVIESGHP DYKKGDLLWG
101: IVGWEEYSVI TPMAHMHFKI QHTDVPLSYY TGLLGMPGMT AYAGFYEVCS PKKGETVYVS AASGAVGQLV GQFAKMMGCY VVGSAGSKEK VDLLKTKFGF
201: DDAFNYKEES DLSAALKRCF PKGIDMYFEN VGGKMLDAVL LNMNPHGRIA VCGMISQYNL ENQEGVHNLS NIIYKRIRIQ GFVVADFYDK YPKFLELVLP
301: RIKEGKITYV EDVADGLEKA PEALVGLFHG KNVGKQVVVI ARE

Arabidopsis Description

P2NADP-dependent alkenal double bond reductase P2 [Source:UniProtKB/Swiss-Prot;Acc:Q39173]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.