CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46910	Soybean	cytosol	60.63	92.54
VIT_00s0220g00130.t01	Wine grape	cytosol	77.87	78.32
Solyc05g055700.2.1	Tomato	cytosol	75.86	73.95
CDY60946	Canola	cytosol	74.14	73.71
PGSC0003DMT400060048	Potato	cytosol	75.57	73.67
Bra022471.1-P	Field mustard	cytosol	74.14	73.5
CDY16411	Canola	cytosol	73.85	73.43
TraesCS3D01G396000.1	Wheat	cytosol	43.39	72.6
GSMUA_Achr10P...	Banana	cytosol	71.55	71.76
AT1G65560.1	Thale cress	cytosol	69.83	69.43
TraesCS3D01G396200.1	Wheat	cytosol, peroxisome, plastid	65.52	64.77
TraesCS3B01G434300.1	Wheat	cytosol	65.23	64.49
KRH36166	Soybean	cytosol	45.98	64.0
TraesCS3A01G401400.1	Wheat	cytosol	64.66	63.92
TraesCSU01G228300.1	Wheat	cytosol	18.39	63.37
KRH44857	Soybean	cytosol	31.61	62.86
KRH48965	Soybean	cytosol	46.84	62.69
KRH66319	Soybean	cytosol	61.78	62.68
KRH66322	Soybean	nucleus	60.92	61.99
KRH66306	Soybean	nucleus	59.77	60.64
KRH66321	Soybean	cytosol	58.33	59.18
HORVU3Hr1G090050.28	Barley	plastid	64.66	59.06
HORVU3Hr1G090120.1	Barley	mitochondrion	39.37	58.05
KRG90594	Soybean	mitochondrion	17.53	55.96
KRH66323	Soybean	cytosol	55.46	55.78
HORVU2Hr1G115460.2	Barley	cytosol	37.07	51.19
Zm00001d042555_P001	Maize	cytosol, plastid	66.09	49.68
HORVU7Hr1G075560.3	Barley	cytosol	34.77	48.02
KRH54972	Soybean	cytosol	47.13	47.4
KRH66318	Soybean	cytosol	16.38	43.85
GSMUA_Achr8P08570_001	Banana	extracellular	70.69	42.41
KRH66218	Soybean	cytosol	13.51	39.17
KRH26780	Soybean	cytosol	37.07	36.86
EES01886	Sorghum	extracellular	66.09	34.9
KRH26779	Soybean	cytosol	36.21	34.81
KRH50260	Soybean	extracellular	20.69	34.62
KRH22573	Soybean	cytoskeleton, cytosol, peroxisome	35.92	34.34
KRG99608	Soybean	cytosol	17.53	31.61
KRH49605	Soybean	cytosol	9.48	28.21
KRH71155	Soybean	nucleus	31.9	17.54
KRG88432	Soybean	cytosol	5.46	7.48

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	UniProt:A0A0R4J5U6	EMBL:ACUP02011530	InterPro:ADH_C
EnsemblPlantsGene:GLYMA_18G298200	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:GroES-like_sf	EnsemblPlants:KRH01782	ProteinID:KRH01782	ProteinID:KRH01782.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00107	PFAM:PF16884	InterPro:PKS_ER	PANTHER:PTHR43205	PANTHER:PTHR43205:SF8	SMART:SM00829
SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI00018C65B7	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:57579777..57583443

Molecular Weight (calculated)

38668.6 Da

IEP (calculated)

6.679

GRAVY (calculated)

-0.131

Length

348 amino acids

Sequence
(BLAST)

001: MAEEALLQNK QVLFKGYIDG VPKETDMELK VDSHIALKPP PQGSSAILVK NLYLSCDPYM RGRMRDFHGS YIPPFLPAQA LEGFGVSKVI HSDNPNYKPG
101: DFITGFTGWE EYSLIQRTEQ LRKIHPDDAI PLSFHVGLLG MPGFTAYAGF YEVSTPSKGE YVFVSAASGA VGQLVGQLAK LHGCYVVGSA GSKEKVDLLK
201: NKLGFDEAFN YKEELDLNAA LQRYFPQGID IYFDNVGGDM LDAALLNMRI HGRIAVCGMV SQQSLSKPIG IYNLFNLITK RIKMQGFLQS DYLHLYPRFL
301: EDVSSYYKQG KIVYIEDMNE GLESAPAAFV GLFHGKNVGK QVIRVAHE

Best Arabidopsis Sequence Match ( AT1G65560.1 )
(BLAST)

001: MGEVSVVENK KVILKNYVDG IPTETDMEVK LGETIELKAP KGSSCFLVKN LYLSCDPYMR GRMRDFHGSY LPPFVPGQRI EGFGLARVID SDDTNYKPGD
101: IVSGIIGWEE YSLLRSSDNL QLRNIQLDDD IPLSYHLGLL GMAGFTAYAG FNEICCPKKG DSVFVSAACG AVGQLVGQLA KLHGCYVVGS AGSKQKVEIL
201: KNELGYDEAF NYKEEADLDT ALKRYFPEGI DIYFDNVGGS MLDAALLNMK VRGRIALCGM VSLQSLSTSS QGIKNLYSAI YKRLRLEGFL QSDYLHIFPQ
301: FLENVKRYYK EGKIVYVEDI SEGLDLAPAA LVGLFSGKNI GKQVVRVAKE

Arabidopsis Description

Zinc-binding dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4IBH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.