Factsheet for PGSC0003DMT400060048

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055700.2.1	Tomato	cytosol	95.24	95.24
KRH01782	Soybean	nucleus	73.67	75.57
VIT_00s0220g00130.t01	Wine grape	cytosol	72.55	74.86
KRH46910	Soybean	cytosol	47.62	74.56
TraesCS3D01G396000.1	Wheat	cytosol	40.9	70.19
GSMUA_Achr10P...	Banana	cytosol	67.51	69.45
CDY60946	Canola	cytosol	67.79	69.14
CDY16411	Canola	cytosol	67.51	68.86
Bra022471.1-P	Field mustard	cytosol	67.51	68.66
AT1G65560.1	Thale cress	cytosol	66.67	68.0
TraesCS3D01G396200.1	Wheat	cytosol, peroxisome, plastid	63.31	64.2
TraesCS3B01G434300.1	Wheat	cytosol	63.03	63.92
TraesCS3A01G401400.1	Wheat	cytosol	62.75	63.64
PGSC0003DMT400083197	Potato	cytosol	42.86	62.7
PGSC0003DMT400071464	Potato	cytosol	14.57	62.65
PGSC0003DMT400075488	Potato	cytosol	59.66	62.1
TraesCSU01G228300.1	Wheat	cytosol	17.37	61.39
PGSC0003DMT400012544	Potato	cytosol	58.82	61.22
PGSC0003DMT400079649	Potato	cytosol	58.26	60.64
PGSC0003DMT400020187	Potato	cytosol	56.3	58.94
HORVU3Hr1G090050.28	Barley	plastid	62.47	58.53
HORVU3Hr1G090120.1	Barley	mitochondrion	38.66	58.47
PGSC0003DMT400020183	Potato	cytosol	26.61	55.56
PGSC0003DMT400088089	Potato	cytosol	16.53	54.13
HORVU2Hr1G115460.2	Barley	cytosol	36.97	52.38
HORVU7Hr1G075560.3	Barley	cytosol	35.29	50.0
Zm00001d042555_P001	Maize	cytosol, plastid	64.71	49.89
PGSC0003DMT400088882	Potato	cytosol, nucleus, peroxisome	44.26	45.27
PGSC0003DMT400095859	Potato	cytosol	23.25	44.62
GSMUA_Achr8P08570_001	Banana	extracellular	65.83	40.52
PGSC0003DMT400028517	Potato	cytosol	16.53	35.76
EES01886	Sorghum	extracellular	64.43	34.9
PGSC0003DMT400012166	Potato	cytosol	12.89	34.59
PGSC0003DMT400066606	Potato	cytosol, endoplasmic reticulum, vacuole	29.97	16.88

Protein Annotations

EntrezGene:102596746	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	InterPro:ADH_C	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf
UniProt:M1C554	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF16884	EnsemblPlantsGene:PGSC0003DMG400023362	PGSC:PGSC0003DMG400023362
EnsemblPlants:PGSC0003DMT400060048	InterPro:PKS_ER	PANTHER:PTHR43205	PANTHER:PTHR43205:SF8	SMART:SM00829	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI000295551D	RefSeq:XP_006345829.1	:	:	:

Description

Alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400023362]

Coordinates

chr5:-:51349697..51353587

Molecular Weight (calculated)

39612.0 Da

IEP (calculated)

7.217

GRAVY (calculated)

-0.189

Length

357 amino acids

Sequence
(BLAST)

001: MEKIEEEAVD QLLGKTVENK QIIFKGYIEG IPKESDMELK IGKKLNLEKV PKGSNGLLVK NLYLSCDPFM RGRMRNFTGS YIPPFVPGEV MEGFGVSKVL
101: DSDNPDFKPG DIISGFTGWE EYSLIYNTEQ LRKTQADDMP LSYHVGLLGM PGFTAYAGFY EVCTPKRGDY VFVSAASGAV GQLVGQLAKL HGCYVIGCAG
201: TKQKVDILKS KLGFDGAFNY KEEADLDKAL KRHFPEGIDI YFDNVGGSIL DAALLNMRIH GRIAICGMVS QQSLSNPQGI HNLFQLITKR VKMQGFLQSD
301: YLHLFPQFLE DVTSLYKQGK ITYLEDMNKG LESGPSAFVG LFSGRNMGKQ VIRVAHH

Best Arabidopsis Sequence Match ( AT1G65560.1 )
(BLAST)

001: MGEVSVVENK KVILKNYVDG IPTETDMEVK LGETIELKAP KGSSCFLVKN LYLSCDPYMR GRMRDFHGSY LPPFVPGQRI EGFGLARVID SDDTNYKPGD
101: IVSGIIGWEE YSLLRSSDNL QLRNIQLDDD IPLSYHLGLL GMAGFTAYAG FNEICCPKKG DSVFVSAACG AVGQLVGQLA KLHGCYVVGS AGSKQKVEIL
201: KNELGYDEAF NYKEEADLDT ALKRYFPEGI DIYFDNVGGS MLDAALLNMK VRGRIALCGM VSLQSLSTSS QGIKNLYSAI YKRLRLEGFL QSDYLHIFPQ
301: FLENVKRYYK EGKIVYVEDI SEGLDLAPAA LVGLFSGKNI GKQVVRVAKE

Arabidopsis Description

Zinc-binding dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4IBH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.