Factsheet for PGSC0003DMT400012544

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g063040.1.1	Tomato	extracellular, plastid	95.34	95.34
PGSC0003DMT400083197	Potato	cytosol	62.68	88.11
PGSC0003DMT400088089	Potato	cytosol	27.41	86.24
PGSC0003DMT400079649	Potato	cytosol	85.42	85.42
PGSC0003DMT400020183	Potato	cytosol	40.23	80.7
PGSC0003DMT400020187	Potato	cytosol	80.17	80.65
PGSC0003DMT400075488	Potato	cytosol	76.38	76.38
VIT_05s0094g01120.t01	Wine grape	cytosol	74.05	73.62
PGSC0003DMT400071464	Potato	cytosol	16.33	67.47
PGSC0003DMT400060048	Potato	cytosol	61.22	58.82
PGSC0003DMT400088882	Potato	cytosol, nucleus, peroxisome	49.85	49.0
PGSC0003DMT400012166	Potato	cytosol	17.78	45.86
PGSC0003DMT400095859	Potato	cytosol	24.49	45.16
PGSC0003DMT400028517	Potato	cytosol	18.66	38.79
KRH49605	Soybean	cytosol	11.08	32.48
PGSC0003DMT400066606	Potato	cytosol, endoplasmic reticulum, vacuole	29.74	16.09

Protein Annotations

EntrezGene:102599848	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	InterPro:ADH_C	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf
UniProt:M1A1D9	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF16884	EnsemblPlantsGene:PGSC0003DMG400004895	PGSC:PGSC0003DMG400004895
EnsemblPlants:PGSC0003DMT400012544	InterPro:PKS_ER	PANTHER:PTHR43205	PANTHER:PTHR43205:SF9	SMART:SM00829	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI000296D21A	RefSeq:XP_006357421.1	:	:	:

Description

Allyl alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400004895]

Coordinates

chr6:+:48396400..48399167

Molecular Weight (calculated)

38050.1 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.057

Length

343 amino acids

Sequence
(BLAST)

001: MAEEVSNKQV ILKHYVTSYL KESDMELKNT TIKLNVPEGS NAMVLKNLFL SCDPYMRNRM KKFEGGYVES FTPGSPITGY GVAKVLESGD SNFQKGDLVL
101: GRTGWEEYSI VTATPTLFKI RDKDVPLSYY TGILGMPGLT AYAGFYEVCS PKKGETVFVS AASGAVGQLV GQFAKMLGCY VVGSAGSKEK VDRLKSTFGF
201: DEAFNYKEEQ DLDAALKRHF PDGIDIYFEN VGGKMLDAVL LNMKIHGRIA VCGMISQYNL EQTEGVHNLF CLISKRIRME GFLVFDYYHL YPKYLEMIIL
301: QIKAGKVVYV EDVAEGLESA PSALVGLFSG RNIGKQVVMV SRE

Best Arabidopsis Sequence Match ( AT5G16990.1 )
(BLAST)

001: MTTNKQVIFK DHVSGFPKES DFNFTTTTVE LRVPEGSKSV LVKNLYLSCD PYMRSRMGKP DPSSALAQAY APGKPIYGYG VSRVIESGHP DYKKGDLLWG
101: IVGWEEYSVI TPMAHMHFKI QHTDVPLSYY TGLLGMPGMT AYAGFYEVCS PKKGETVYVS AASGAVGQLV GQFAKMMGCY VVGSAGSKEK VDLLKTKFGF
201: DDAFNYKEES DLSAALKRCF PKGIDMYFEN VGGKMLDAVL LNMNPHGRIA VCGMISQYNL ENQEGVHNLS NIIYKRIRIQ GFVVADFYDK YPKFLELVLP
301: RIKEGKITYV EDVADGLEKA PEALVGLFHG KNVGKQVVVI ARE

Arabidopsis Description

P2NADP-dependent alkenal double bond reductase P2 [Source:UniProtKB/Swiss-Prot;Acc:Q39173]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.