Factsheet for Solyc06g063040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012544	Potato	cytosol	95.34	95.34
Solyc12g010960.1.1	Tomato	cytosol	37.9	86.09
Solyc01g080030.1.1	Tomato	cytosol	64.43	82.77
Solyc12g010950.1.1	Tomato	cytosol	82.51	81.79
Solyc03g007200.1.1	Tomato	cytosol	74.34	81.47
Solyc12g010970.1.1	Tomato	cytosol	44.9	76.24
Solyc12g096760.1.1	Tomato	extracellular	75.22	75.22
VIT_05s0094g01120.t01	Wine grape	cytosol	73.47	73.04
GSMUA_Achr5P17110_001	Banana	cytosol	49.85	70.66
TraesCS5D01G310500.1	Wheat	cytosol	63.56	63.56
TraesCS5A01G303300.1	Wheat	cytosol	52.77	63.51
TraesCS5B01G303800.1	Wheat	cytosol	62.97	62.97
GSMUA_Achr6P06920_001	Banana	cytosol	63.56	62.82
TraesCS5D01G310600.1	Wheat	cytosol	63.27	62.54
TraesCS5A01G303400.1	Wheat	cytosol	62.97	62.43
Zm00001d023990_P001	Maize	cytosol	62.68	62.32
EES16901	Sorghum	cytosol	62.1	60.34
TraesCS5B01G097900.1	Wheat	cytosol	60.93	60.23
Os12t0226900-01	Rice	cytosol	60.35	59.83
Os04t0497000-01	Rice	cytosol	60.06	59.71
Os12t0227400-01	Rice	cytosol	60.06	59.54
Os12t0226700-01	Rice	plasma membrane	60.06	59.54
KXG23283	Sorghum	cytosol	48.69	59.43
TraesCS2B01G083300.1	Wheat	cytosol	59.48	59.13
TraesCS2D01G068700.1	Wheat	cytosol	59.77	59.08
TraesCS5D01G103800.1	Wheat	cytosol	59.48	58.79
Os12t0225900-01	Rice	cytosol, mitochondrion	58.6	58.26
TraesCS2A01G069900.1	Wheat	peroxisome	58.31	58.14
TraesCS2A01G070000.1	Wheat	cytosol	58.6	58.09
Solyc05g055700.2.1	Tomato	cytosol	60.35	57.98
TraesCS2D01G068900.1	Wheat	cytosol	58.31	57.8
TraesCS5A01G091700.1	Wheat	cytosol	57.73	57.39
KXG28081	Sorghum	peroxisome	59.18	57.18
Solyc11g030720.1.1	Tomato	cytoskeleton, cytosol, peroxisome	57.14	56.98
TraesCS2B01G083600.2	Wheat	cytosol	57.43	56.77
OQU83135	Sorghum	cytosol	58.02	56.53
Zm00001d007285_P002	Maize	peroxisome	58.02	56.21
EES08221	Sorghum	cytosol	57.14	55.68
TraesCS4A01G229900.1	Wheat	cytosol	55.39	54.13
Zm00001d049032_P001	Maize	cytosol	56.56	54.04
Os12t0226400-00	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	54.52	53.74
Solyc06g064670.1.1	Tomato	cytosol	11.95	53.25
TraesCS4B01G086100.1	Wheat	cytosol	55.69	53.2
Zm00001d049031_P001	Maize	peroxisome	38.78	53.2
TraesCS5B01G303700.1	Wheat	golgi	63.27	53.19
Os11t0255500-01	Rice	cytosol	54.81	52.37
Solyc09g091700.2.1	Tomato	cytosol, nucleus, peroxisome	44.61	49.04
GSMUA_Achr5P17100_001	Banana	cytosol	13.12	42.06
Solyc07g045080.2.1	Tomato	cytoskeleton, cytosol, peroxisome	35.28	40.2
Solyc07g045090.2.1	Tomato	cytoskeleton, cytosol, peroxisome	38.19	38.08
KRH49605	Soybean	cytosol	11.95	35.04
Solyc01g108150.2.1	Tomato	nucleus	30.03	16.25

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	InterPro:ADH_C	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:K4C735
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF16884	InterPro:PKS_ER	PANTHER:PTHR43205	PANTHER:PTHR43205:SF9
SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc06g063040.1	EnsemblPlants:Solyc06g063040.1.1	UniParc:UPI0002766B40

Description

No Description!

Coordinates

chr6:-:39799587..39800618

Molecular Weight (calculated)

38026.1 Da

IEP (calculated)

6.262

GRAVY (calculated)

-0.044

Length

343 amino acids

Sequence
(BLAST)

001: MAEEVSNKQV ILKHFVTSDL KESDMEFKNT TIKLNVPEGC NAMVLRNLFL SCDPYMRLRM KKFEGSYIES FTPGSPITGY GVAKVLESGD SNFQKGDLVL
101: GRTGWEEYSI VTATPTLFKI HDKDVPLSYY TGILGMPGLT AYAGFYEVCS PKKGETVFVS AASGAVGQLV GQFAKMLGCY VVGSAGSKEK VDRLKSTFGF
201: DEAFNYKEEQ DLDAALKKYL PDGIDIYFEN VGGKMLDAVL LNMKIHGRIA VCGMISQYNL EQTEGVHNLF CLISKRIRME GFLVHDYYHL YPKYLDMIIP
301: QIKAGKVVYV EDIAEGLESA PSALVGLFSG RNIGKQVVMV SRE

Best Arabidopsis Sequence Match ( AT5G16970.1 )
(BLAST)

001: MTATNKQVIL KDYVSGFPTE SDFDFTTTTV ELRVPEGTNS VLVKNLYLSC DPYMRIRMGK PDPSTAALAQ AYTPGQPIQG YGVSRIIESG HPDYKKGDLL
101: WGIVAWEEYS VITPMTHAHF KIQHTDVPLS YYTGLLGMPG MTAYAGFYEV CSPKEGETVY VSAASGAVGQ LVGQLAKMMG CYVVGSAGSK EKVDLLKTKF
201: GFDDAFNYKE ESDLTAALKR CFPNGIDIYF ENVGGKMLDA VLVNMNMHGR IAVCGMISQY NLENQEGVHN LSNIIYKRIR IQGFVVSDFY DKYSKFLEFV
301: LPHIREGKIT YVEDVADGLE KAPEALVGLF HGKNVGKQVV VVARE

Arabidopsis Description

AERNADPH-dependent oxidoreductase 2-alkenal reductase [Source:UniProtKB/Swiss-Prot;Acc:Q39172]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.