Factsheet for Solyc01g108150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066606	Potato	cytosol, endoplasmic reticulum, vacuole	93.22	93.22
KRH50260	Soybean	extracellular	25.55	77.88
VIT_03s0063g00610.t01	Wine grape	peroxisome	76.97	76.97
KRH71155	Soybean	nucleus	72.87	72.99
CDY16520	Canola	cytosol, peroxisome, plastid	70.03	70.59
CDY32846	Canola	cytosol, peroxisome, plastid	69.09	69.63
CDY28090	Canola	cytosol, peroxisome, plastid	69.09	69.52
CDY51039	Canola	cytosol, peroxisome, plastid	68.93	69.37
GSMUA_Achr6P04320_001	Banana	cytosol	69.24	69.35
Bra018802.1-P	Field mustard	cytosol, peroxisome, plastid	68.61	69.16
Os09t0459800-01	Rice	nucleus, plasma membrane	68.93	68.93
EER96863	Sorghum	peroxisome	68.61	68.61
Bra014212.1-P	Field mustard	cytosol, peroxisome, plastid	69.87	68.15
Zm00001d020727_P016	Maize	mitochondrion	67.67	67.67
TraesCS5A01G240300.1	Wheat	nucleus	67.03	67.03
TraesCS5D01G246800.2	Wheat	peroxisome	66.88	66.88
TraesCS5B01G238400.1	Wheat	peroxisome	66.88	66.88
AT1G49670.2	Thale cress	peroxisome	67.82	65.95
TraesCS5A01G240400.1	Wheat	peroxisome	65.46	65.46
OQU89618	Sorghum	peroxisome	65.62	64.9
TraesCS5B01G238500.1	Wheat	peroxisome	64.83	64.83
TraesCS5D01G247000.2	Wheat	peroxisome	59.31	63.62
HORVU5Hr1G068630.9	Barley	plastid	65.14	63.25
Zm00001d020728_P005	Maize	cytosol, peroxisome, plasma membrane	62.93	61.01
KRG88432	Soybean	cytosol	24.29	60.63
OQU87352	Sorghum	cytosol	12.78	46.02
Solyc12g010960.1.1	Tomato	cytosol	8.2	34.44
Solyc12g096760.1.1	Tomato	extracellular	16.56	30.61
Solyc06g063040.1.1	Tomato	extracellular, plastid	16.25	30.03
Solyc03g007200.1.1	Tomato	cytosol	14.67	29.71
Solyc01g080030.1.1	Tomato	cytosol	12.3	29.21
Solyc05g055700.2.1	Tomato	cytosol	16.4	29.13
Solyc12g010950.1.1	Tomato	cytosol	15.77	28.9
Solyc11g030720.1.1	Tomato	cytoskeleton, cytosol, peroxisome	15.14	27.91
Solyc09g091700.2.1	Tomato	cytosol, nucleus, peroxisome	13.56	27.56
Solyc06g064670.1.1	Tomato	cytosol	3.15	25.97
Solyc07g045080.2.1	Tomato	cytoskeleton, cytosol, peroxisome	12.3	25.91
Solyc07g045090.2.1	Tomato	cytoskeleton, cytosol, peroxisome	13.56	25.0
Solyc12g010970.1.1	Tomato	cytosol	7.57	23.76

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	InterPro:ADH_C	InterPro:ADH_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005777	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:GroES-like_sf	UniProt:K4B331	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PFAM:PF00107
PFAM:PF08240	InterPro:PKS_ER	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43677
PANTHER:PTHR43677:SF3	InterPro:SDR_fam	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS
EnsemblPlantsGene:Solyc01g108150.2	EnsemblPlants:Solyc01g108150.2.1	UniParc:UPI0002768238	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:95505678..95521999

Molecular Weight (calculated)

68352.3 Da

IEP (calculated)

8.957

GRAVY (calculated)

0.124

Length

634 amino acids

Sequence
(BLAST)

001: MELKPGLSAL VTGGASGIGK ALCLALAKKG VFVTIVDSSE ERGKEVAGLA EKECAEFHSG LKFPVVMFIR SDVTNTGELK AAFEKHCTTY GGLDICINSA
101: GIGDYVQFHN DQTDGSKSWR HVVNVNLVAV IDSTRLAIQA MQTAQKPGVI INLGSASGLY PMFTGPIYSA TKGGVVMFTR SLARFKRQGI RINVLCPEFV
201: QTDLAEKAAA SSIARFGGYL PMKLVVEGAF ELIRDESKAG SCLWITNRRG MEYWPTPAEE AKYLLRSSKA RKKSLVTVPM DLQIPHSFEK VVVHTLSHNF
301: RSATRIVRTE LRLPLKPDHV LLKVIYAGVN ASDVNFSSGR YFSGNGKDIT SLLPLDSGFE AVGVIAALGD GVRNLKIGVP AAIMTFGGYA EFVMVPTKHI
401: LPVEKPDPEV LAMLTSGLTA SIALEKAAQM ESGKVVLVTA AAGATGQFAV QLAKLAGNTV VATCGGYEKA KLLKDLGVDR VIDYKVEDIK AVLKEEFPKG
501: ADIVYESVGG EMFDICLNAL AVYGRLVVIG MISQYQGEHG WKPRNYPGIC EKLLAKSQTV AGFFLIQYAH LWQEHLDRLV NLFSSGKLKV AIDPKQFVGL
601: HSVADAVEYL HSGKSAGKVV VCVDPTYAKQ PAKL

Best Arabidopsis Sequence Match ( AT1G49670.1 )
(BLAST)

001: MEIKPGLSAL VTGGASGIGR ALCLALAEKG VFVTVADFSE EKGQETTSLV REANAKFHQG LSFPSAIFVK CDVTNRGDLL AAFDKHLATF GTLDICINNA
101: GISTPLRFDK DDTDGSKSWK HTINVDLIAV VEGTQLAIKA MKAKQKPGVI INMGSAAGLY PMPVDPIYAA SKAGVVLFTR SLAYYRRQGI RINVLCPEFI
201: KTDLAEAIDA SILESIGGYM SMDMLIKGAF ELITDEKKAG ACLWITKRRG LEYWPTPMEE TKYLVGSSSR KRPSFKVSTK IEFPQSFEKM IVHTLSHKFR
301: SATRIVRAPL QLPIGPHQVL LKIIYAGVNA SDVNFSSGRY FTGGSPKLPF DAGFEGVGLI AAVGESVKNL EVGTPAAVMT FGAYSEYMIV SSKHVLPVPR
401: PDPEVVAMLT SGLTALIALE KAGQMKSGET VLVTAAAGGT GQFAVQLAKL SGNKVIATCG GSEKAKLLKE LGVDRVIDYK SENIKTVLKK EFPKGVNIIY
501: ESVGGQMFDM CLNALAVYGR LIVIGMISQY QGEKGWEPAK YPGLCEKILA KSQTVAGFFL VQYSQLWKQN LDKLFNLYAL GKLKVGIDQK KFIGLNAVAD
601: AVEYLHSGKS TGKVVVCIDP AFEQKTSRL

Arabidopsis Description

NQRARP protein (REF) [Source:TAIR;Acc:AT1G49670]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.