Factsheet for TraesCS5A01G240300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, peroxisome, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G238400.1	Wheat	peroxisome	99.37	99.37
TraesCS5D01G246800.2	Wheat	peroxisome	99.05	99.05
EER96863	Sorghum	peroxisome	86.59	86.59
Os09t0459800-01	Rice	nucleus, plasma membrane	86.44	86.44
Zm00001d020727_P016	Maize	mitochondrion	85.8	85.8
TraesCS5A01G240400.1	Wheat	peroxisome	80.91	80.91
OQU89618	Sorghum	peroxisome	80.13	79.25
KRH50260	Soybean	extracellular	24.13	73.56
Zm00001d020728_P005	Maize	cytosol, peroxisome, plasma membrane	75.87	73.55
GSMUA_Achr6P04320_001	Banana	cytosol	72.24	72.35
VIT_03s0063g00610.t01	Wine grape	peroxisome	70.35	70.35
KRH71155	Soybean	nucleus	70.03	70.14
CDY16520	Canola	cytosol, peroxisome, plastid	68.45	69.0
CDY32846	Canola	cytosol, peroxisome, plastid	67.19	67.73
CDY28090	Canola	cytosol, peroxisome, plastid	67.19	67.62
Bra018802.1-P	Field mustard	cytosol, peroxisome, plastid	67.03	67.57
CDY51039	Canola	cytosol, peroxisome, plastid	67.03	67.46
Solyc01g108150.2.1	Tomato	nucleus	67.03	67.03
Bra014212.1-P	Field mustard	cytosol, peroxisome, plastid	68.61	66.92
PGSC0003DMT400066606	Potato	cytosol, endoplasmic reticulum, vacuole	66.88	66.88
AT1G49670.2	Thale cress	peroxisome	65.62	63.8
KRG88432	Soybean	cytosol	25.39	63.39
OQU87352	Sorghum	cytosol	12.93	46.59
TraesCS5A01G303300.1	Wheat	cytosol	14.67	32.63
TraesCS5A01G303400.1	Wheat	cytosol	16.88	30.92
TraesCS5A01G091700.1	Wheat	cytosol	16.4	30.14
TraesCS3A01G401400.1	Wheat	cytosol	15.77	28.41
TraesCS4A01G229900.1	Wheat	cytosol	15.62	28.21
TraesCS3A01G087300.1	Wheat	cytosol	15.14	27.2
TraesCS7A01G374800.1	Wheat	cytosol	14.67	27.19
TraesCS2A01G069900.1	Wheat	peroxisome	14.51	26.74
TraesCS2A01G070000.1	Wheat	cytosol	14.35	26.3

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	InterPro:ADH_C	InterPro:ADH_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491
GO:GO:0055114	InterPro:GroES-like_sf	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PFAM:PF00107	PFAM:PF08240
InterPro:PKS_ER	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	ScanProsite:PS01162	PANTHER:PTHR43677
PANTHER:PTHR43677:SF3	InterPro:Quin_OxRdtase/zeta-crystal_CS	InterPro:SDR_fam	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	EnsemblPlantsGene:TraesCS5A01G240300	EnsemblPlants:TraesCS5A01G240300.1	TIGR:cd05323	TIGR:cd08250	:

Description

No Description!

Coordinates

chr5A:+:456596583..456608018

Molecular Weight (calculated)

68547.3 Da

IEP (calculated)

9.343

GRAVY (calculated)

0.078

Length

634 amino acids

Sequence
(BLAST)

001: MELKPGMSAL VTGGASGIGK ALCIAFAQKG LFVTVVDFSE QNGREVTSLV QKENRKFHGD LGVPSAIFVK CDVSIEGDLA AAFAKHVDTY GGLDICINCA
101: GIANKTLVYY DTSDGTRTWR HAINVNFVAV IDGTRIASQI MRSRKKPGVI INIGSAAGLY PMFADPIYTG TKGGVVMFTR SLAPLKRHGV RVNVLCPEFV
201: QTNMAEQINQ KIVHATGGFL KMEEVVNGAF ELIKDESKAG ACLWITKRRG MEYWPSAEEQ RKYLLNYTKS KRTVTKNVFP SIQTPEFYEK IVVHTLSHNF
301: RNATRLDRVR LRLPIEPQSA LVKIIYAGVN ASDVNFSSGR YFSGSAKETA ARLPFDAGFE AVGIVASVGD AVSHVKVGSP VALMTFGSYA EFTMVPAKHL
401: LPVPRPDPEV VAMLTSGLTA SISLEKAGQM TSGQVVLVTA AAGGTGQFAV QLAKLAGNKV VATCGGESKA AFLASLGVDR VINYQHEKIK DVLKKEFPKG
501: VDIIYESVGG DMFDLCLNAL AVHGRLIVIG MISQYQGEEG WKPKNYTGLC EKILAKSQTV AGFFLVQHAH MWQDHLDKLF ELYASGKLKV SLDPKKFLGV
601: ASAVDAVEYL HSGKSVGKVV VCIDPAYSQT LAKL

Best Arabidopsis Sequence Match ( AT1G49670.1 )
(BLAST)

001: MEIKPGLSAL VTGGASGIGR ALCLALAEKG VFVTVADFSE EKGQETTSLV REANAKFHQG LSFPSAIFVK CDVTNRGDLL AAFDKHLATF GTLDICINNA
101: GISTPLRFDK DDTDGSKSWK HTINVDLIAV VEGTQLAIKA MKAKQKPGVI INMGSAAGLY PMPVDPIYAA SKAGVVLFTR SLAYYRRQGI RINVLCPEFI
201: KTDLAEAIDA SILESIGGYM SMDMLIKGAF ELITDEKKAG ACLWITKRRG LEYWPTPMEE TKYLVGSSSR KRPSFKVSTK IEFPQSFEKM IVHTLSHKFR
301: SATRIVRAPL QLPIGPHQVL LKIIYAGVNA SDVNFSSGRY FTGGSPKLPF DAGFEGVGLI AAVGESVKNL EVGTPAAVMT FGAYSEYMIV SSKHVLPVPR
401: PDPEVVAMLT SGLTALIALE KAGQMKSGET VLVTAAAGGT GQFAVQLAKL SGNKVIATCG GSEKAKLLKE LGVDRVIDYK SENIKTVLKK EFPKGVNIIY
501: ESVGGQMFDM CLNALAVYGR LIVIGMISQY QGEKGWEPAK YPGLCEKILA KSQTVAGFFL VQYSQLWKQN LDKLFNLYAL GKLKVGIDQK KFIGLNAVAD
601: AVEYLHSGKS TGKVVVCIDP AFEQKTSRL

Arabidopsis Description

NQRARP protein (REF) [Source:TAIR;Acc:AT1G49670]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.