CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50260	Soybean	extracellular	31.28	95.19
KRG88432	Soybean	cytosol	33.02	82.28
VIT_03s0063g00610.t01	Wine grape	peroxisome	75.83	75.71
Solyc01g108150.2.1	Tomato	nucleus	72.99	72.87
PGSC0003DMT400066606	Potato	cytosol, endoplasmic reticulum, vacuole	72.35	72.24
GSMUA_Achr6P04320_001	Banana	cytosol	70.93	70.93
TraesCS5D01G246800.2	Wheat	peroxisome	70.3	70.19
TraesCS5B01G238400.1	Wheat	peroxisome	70.3	70.19
TraesCS5A01G240300.1	Wheat	nucleus	70.14	70.03
CDY32846	Canola	cytosol, peroxisome, plastid	69.35	69.79
EER96863	Sorghum	peroxisome	69.83	69.72
Zm00001d020727_P016	Maize	mitochondrion	69.83	69.72
CDY16520	Canola	cytosol, peroxisome, plastid	69.04	69.48
CDY28090	Canola	cytosol, peroxisome, plastid	69.04	69.37
CDY51039	Canola	cytosol, peroxisome, plastid	69.04	69.37
Bra018802.1-P	Field mustard	cytosol, peroxisome, plastid	68.56	69.0
Os09t0459800-01	Rice	nucleus, plasma membrane	68.4	68.3
Bra014212.1-P	Field mustard	cytosol, peroxisome, plastid	69.04	67.23
AT1G49670.2	Thale cress	peroxisome	68.4	66.41
TraesCS5A01G240400.1	Wheat	peroxisome	64.93	64.83
OQU89618	Sorghum	peroxisome	65.56	64.74
TraesCS5B01G238500.1	Wheat	peroxisome	64.45	64.35
TraesCS5D01G247000.2	Wheat	peroxisome	59.87	64.13
HORVU5Hr1G068630.9	Barley	plastid	64.45	62.48
Zm00001d020728_P005	Maize	cytosol, peroxisome, plasma membrane	63.51	61.47
OQU87352	Sorghum	cytosol	12.01	43.18
KRH46910	Soybean	cytosol	12.95	35.96
KRH48965	Soybean	cytosol	14.06	34.23
KRG90594	Soybean	mitochondrion	5.69	33.03
KRH66322	Soybean	nucleus	17.38	32.16
KRH01782	Soybean	nucleus	17.54	31.9
KRH66323	Soybean	cytosol	17.38	31.79
KRH66306	Soybean	nucleus	17.22	31.78
KRH44857	Soybean	cytosol	8.69	31.43
KRH66321	Soybean	cytosol	16.9	31.2
KRH66319	Soybean	cytosol	16.75	30.9
KRH36166	Soybean	cytosol	12.16	30.8
KRH26780	Soybean	cytosol	14.06	25.43
KRH22573	Soybean	cytoskeleton, cytosol, peroxisome	14.06	24.45
KRH66218	Soybean	cytosol	4.58	24.17
KRH26779	Soybean	cytosol	13.59	23.76
KRH54972	Soybean	cytosol	12.32	22.54
KRG99608	Soybean	cytosol	6.64	21.76
KRH66318	Soybean	cytosol	4.11	20.0
KRH49605	Soybean	cytosol	3.63	19.66

Protein Annotations

EntrezGene:100797559	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	EMBL:ACUP02000873	InterPro:ADH_C
InterPro:ADH_N	EnsemblPlantsGene:GLYMA_02G133500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:I1JEV3
EnsemblPlants:KRH71155	ProteinID:KRH71155	ProteinID:KRH71155.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PFAM:PF00107
PFAM:PF08240	InterPro:PKS_ER	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	ScanProsite:PS01162
PANTHER:PTHR43677	PANTHER:PTHR43677:SF3	InterPro:Quin_OxRdtase/zeta-crystal_CS	InterPro:SDR_fam	SMART:SM00829	SUPFAM:SSF50129
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0002337B5C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:13806600..13817968

Molecular Weight (calculated)

68444.5 Da

IEP (calculated)

9.534

GRAVY (calculated)

0.121

Length

633 amino acids

Sequence
(BLAST)

001: MEIKPGLSAL VTGGASGIGK GLALALAEKG VFITIVDFSE EKGRQAAILV EKINSNFHSK LGFPSAIFVK CDVSNARDLA AAFEKHFLTY GGLDICINSA
101: GISSSVPFRD DQTDGTRTWR YTVNVNFTAV IDSTRLAIKI MEASKRPGVI INLGSASGLY PMVADPIYSG SKGGVVMFSR SLRLYKRQGI RVNVLCPEFV
201: ETEMGNKIDP KIINLSGGFV PMEMVVKGAF ELIMDESKAG HCLWITNRQG MEYWPSPSEE AKYLIRSSRF RRRSDFKAPL IKIPESFEKI VVHTLTHNFR
301: NATSIVRTPL RLPVKPKHVL VKIIFAGVNA SDVNFSSGRY FGGNNNDVVS RLPFDAGFEA VGIIAAVGDS VTDLKVGMPC AFMTFGGYAE FLMIPSKHAL
401: PVPRPDPEVV AMLTSGLTAS IALEKAGQME SGKVVLVTAA AGGTGQFAVQ LAKLAGNTVV ATCGGGAKAK LLKDLGVNRV IDYHSEDVKT VLREEFPKGI
501: DIIYESVGGD MLNLCLNALA VHGRLIVIGM ISQYQGEKGW TPSKYPGLLE KLLAKSQTVS GFFLVQYGHL WQEHLDRLFN LYSSGKLKVA IDPKKFIGLH
601: SAADAVEYLH SGKSVGKVVV SVDPSFLPQV AKL

Best Arabidopsis Sequence Match ( AT1G49670.1 )
(BLAST)

001: MEIKPGLSAL VTGGASGIGR ALCLALAEKG VFVTVADFSE EKGQETTSLV REANAKFHQG LSFPSAIFVK CDVTNRGDLL AAFDKHLATF GTLDICINNA
101: GISTPLRFDK DDTDGSKSWK HTINVDLIAV VEGTQLAIKA MKAKQKPGVI INMGSAAGLY PMPVDPIYAA SKAGVVLFTR SLAYYRRQGI RINVLCPEFI
201: KTDLAEAIDA SILESIGGYM SMDMLIKGAF ELITDEKKAG ACLWITKRRG LEYWPTPMEE TKYLVGSSSR KRPSFKVSTK IEFPQSFEKM IVHTLSHKFR
301: SATRIVRAPL QLPIGPHQVL LKIIYAGVNA SDVNFSSGRY FTGGSPKLPF DAGFEGVGLI AAVGESVKNL EVGTPAAVMT FGAYSEYMIV SSKHVLPVPR
401: PDPEVVAMLT SGLTALIALE KAGQMKSGET VLVTAAAGGT GQFAVQLAKL SGNKVIATCG GSEKAKLLKE LGVDRVIDYK SENIKTVLKK EFPKGVNIIY
501: ESVGGQMFDM CLNALAVYGR LIVIGMISQY QGEKGWEPAK YPGLCEKILA KSQTVAGFFL VQYSQLWKQN LDKLFNLYAL GKLKVGIDQK KFIGLNAVAD
601: AVEYLHSGKS TGKVVVCIDP AFEQKTSRL

Arabidopsis Description

NQRARP protein (REF) [Source:TAIR;Acc:AT1G49670]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.