Factsheet for VIT_19s0090g01700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g00460.t01
VIT_17s0000g06020.t01
VIT_19s0014g00030.t01
VIT_19s0014g00060.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16320.1	VIT_07s0031g00460.t01	AT2G23420.1	21798944
AT5G16320.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT5G16320.1	VIT_19s0014g00030.t01	AT4G00650.1	19429606
AT5G16320.1	VIT_19s0014g00060.t01	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67200	Canola	cytosol, nucleus	14.03	38.57
VIT_19s0090g01710.t01	Wine grape	cytosol	22.86	32.47
CDY55572	Canola	nucleus	27.79	29.89
CDX69452	Canola	cytosol	29.35	25.06
Bra008624.1-P	Field mustard	cytosol	28.83	24.61
AT5G16320.1	Thale cress	nucleus	28.83	23.62
KRH73863	Soybean	nucleus	31.69	23.51
CDY67951	Canola	cytosol	28.05	23.43
CDY12290	Canola	cytosol	27.01	23.37
Bra023207.1-P	Field mustard	cytosol	27.79	23.21
VIT_17s0000g00850.t01	Wine grape	cytosol, peroxisome, plasma membrane	17.66	22.82
KRG98570	Soybean	cytosol, nucleus, plastid	32.21	22.59
KRH46301	Soybean	cytosol	31.43	22.16
AT1G31814.1	Thale cress	cytosol	26.49	21.56
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	30.91	21.14
VIT_05s0020g03470.t01	Wine grape	nucleus	28.05	20.69
VIT_14s0030g00690.t01	Wine grape	extracellular, golgi	23.12	20.37
VIT_07s0129g00610.t01	Wine grape	cytosol	29.87	19.93
VIT_11s0016g04070.t01	Wine grape	nucleus	23.12	16.7
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	10.91	14.43
VIT_19s0014g00060.t01	Wine grape	nucleus	9.35	11.36

Protein Annotations

EntrezGene:100262244	wikigene:100262244	MapMan:35.1	ProteinID:CCB50724	ProteinID:CCB50724.1	UniProt:F6HER2
EMBL:FN595751	InterPro:Frigida	GO:GO:0000003	GO:GO:0005575	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0030154
EntrezGene:LOC100262244	wikigene:LOC100262244	PFAM:PF07899	PANTHER:PTHR31791	PANTHER:PTHR31791:SF13	UniParc:UPI000210A414
ArrayExpress:VIT_19s0090g01700	EnsemblPlantsGene:VIT_19s0090g01700	EnsemblPlants:VIT_19s0090g01700.t01	RefSeq:XP_002276345	RefSeq:XP_002276345.1	SEG:seg

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:F6HER2]

Coordinates

chr19:+:7740415..7752280

Molecular Weight (calculated)

42396.3 Da

IEP (calculated)

9.319

GRAVY (calculated)

-0.345

Length

385 amino acids

Sequence
(BLAST)

001: MDAEALRRYI MDHPNDRETL RSELLDAFQV ARDPAKMVLD ALTGFFPSNA NEDGSSELHT MRRSCVFMLE QLMLFSPEIG EDVRQRAKSL AQEWKGKVKV
101: GDNTLKPMGF LHLLAAYGLG SDYDSTELLE LLIDVVRYRE VFGLCRGLNL VDKVPDLIQN LIGSGKPNLA VKFVLEFKLT HKFPLIAILK DIVESSRDVA
201: RKVRKDGKHS LQSVNEATSK EISALKLVTK YIKDYDLNNE YPGAPLEERI QKLESQMAAR TAAKKRPALA PAPRPKQQKK QKSKQAQTTA TASPSVPSGA
301: AGTSSTAAPF QQPHLQAPGL VPDGPVPFMN PSAGLYGFAG VPMGFPGNLG PPMPHLHPME PQLPMPFAHG GYGLQSLYPP AYFHQ

Best Arabidopsis Sequence Match ( AT5G16320.1 )
(BLAST)

001: MTASETIATA INQIDEKKEK LKKAFDDLQA HRSLLSPSFS LSWSEIDSHF SSLQSSLASR FRLLHSTSPL EHDSYRIDAS DAGKSSSSEE VSEQPVVEPE
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ

Arabidopsis Description

FRL1FRIGIDA-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.