CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71688
CDY05835
CDY32645
CDY38847

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06005.1	CDX71688	AT4G00650.1	19429606
AT2G06005.1	CDY05835	AT4G00650.1	19429606
AT2G06005.1	CDY32645	AT4G00650.1	19429606
AT2G06005.1	CDY38847	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33404	Canola	plasma membrane	98.89	98.89
Bra015180.1-P	Field mustard	plasma membrane	64.51	94.84
AT2G06005.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	57.67	87.89
VIT_11s0016g01110.t01	Wine grape	plasma membrane	46.95	71.95
CDX70932	Canola	cytosol, mitochondrion, peroxisome	45.66	70.77
CDY51843	Canola	cytosol, peroxisome, plasma membrane	45.29	70.2
KRH12539	Soybean	endoplasmic reticulum, peroxisome, plastid	45.66	69.38
KRH37493	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	45.29	68.82
Solyc12g009100.1.1	Tomato	plasma membrane	43.25	67.24
GSMUA_Achr8P22670_001	Banana	plasma membrane	19.59	62.35
Os02t0778300-01	Rice	plasma membrane	39.37	59.83
TraesCS6B01G367400.1	Wheat	plasma membrane	39.0	59.77
PGSC0003DMT400048982	Potato	cytosol	6.47	59.32
TraesCS6A01G336900.1	Wheat	plasma membrane	38.45	59.09
TraesCS6D01G317300.1	Wheat	plasma membrane	38.45	58.59
EES05887	Sorghum	peroxisome	37.52	57.34
TraesCS7B01G069200.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	39.0	57.34
TraesCS7D01G165500.3	Wheat	plasma membrane	38.63	56.79
TraesCS7A01G163400.1	Wheat	plasma membrane	38.45	56.52
Zm00001d018275_P001	Maize	peroxisome	37.52	53.56
HORVU6Hr1G081380.8	Barley	plasma membrane	37.15	51.54

Protein Annotations

EnsemblPlants:CDY64735	EnsemblPlantsGene:GSBRNA2T00042638001	GO:A0A078JE50	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM192	ncoils:Coil	PANTHER:PTHR31592	PFAM:PF14802	ProteinID:CDY64735	ProteinID:CDY64735.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EC3147	UniProt:A0A078JE50	MapMan:35.1	:

Description

BnaC07g48140DBnaC07g48140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE50]

Coordinates

chrLK034535:-:20385..24683

Molecular Weight (calculated)

61751.4 Da

IEP (calculated)

6.709

GRAVY (calculated)

-0.253

Length

541 amino acids

Sequence
(BLAST)

001: MSTERRPMTN EENAMFLDIL QEAPLFGHRK SRSLVGSYLY LILLAGYAVL AAGAPWIFHH LHHLTPSLLC CCDVALLILT GIFQQYFVFQ VQKIRLQGYY
101: SFSQKLKHVV RLPFAIASYG TAAMLLVIVW DPQISILSTS SLQRIIMIAE SVCAGFFMSL YIGNVHQYNS VNSRPDVLKS LYSPLQPSSS MDGLRYYEGR
201: LSDQQTALLQ YQRENLHFLS EEILSLQEKL SKYEQSDDGS TPQVDLAHLL ASRDQELRTL SAETNQLQSE LRLARSLIAE RDAEVQRVNN TNSQYIEENE
301: RLRAILSEWS MRAANLERAL EVERMSNSEL QKEVAGGRRK QQMVETSEQP PFMEPPPSSR AEEPPSWDEL YKINLMPSEL FLKFRKELQG LRVGVNLELY
401: NEPTNDYHAK LVLKPLSPER KWKFIYEPLH QEVRVLSKKI PLTRFLNLQV GVGHNFQMNA MGWKWKLTSC LGGDGVSRIQ NKTTLGLTPG VDLRFGWRAD
501: FVLPEVTGAL GTEEPLFNMS SGRLEASLDR VEAILTHSEY L

Best Arabidopsis Sequence Match ( AT2G06005.1 )
(BLAST)

001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP

Arabidopsis Description

FIP1Protein FIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8K9]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.