Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G329000.1 | |
| TraesCS5B01G543400.1 | |
| TraesCS5D01G544800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G06005.1 | TraesCS4A01G329000.1 | AT4G00650.1 | 19429606 |
| AT2G06005.1 | TraesCS5B01G543400.1 | AT4G00650.1 | 19429606 |
| AT2G06005.1 | TraesCS5D01G544800.1 | AT4G00650.1 | 19429606 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G367400.1 | Wheat | plasma membrane | 96.34 | 96.88 |
| TraesCS6A01G336900.1 | Wheat | plasma membrane | 96.06 | 96.88 |
| EES05887 | Sorghum | peroxisome | 82.82 | 83.05 |
| Os02t0778300-01 | Rice | plasma membrane | 81.97 | 81.74 |
| HORVU6Hr1G081380.8 | Barley | plasma membrane | 86.2 | 78.46 |
| Zm00001d018275_P001 | Maize | peroxisome | 81.69 | 76.52 |
| TraesCS7D01G165500.3 | Wheat | plasma membrane | 71.55 | 69.02 |
| GSMUA_Achr8P22670_001 | Banana | plasma membrane | 31.27 | 65.29 |
| KRH12539 | Soybean | endoplasmic reticulum, peroxisome, plastid | 64.51 | 64.33 |
| KRH37493 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 63.94 | 63.76 |
| VIT_11s0016g01110.t01 | Wine grape | plasma membrane | 61.13 | 61.47 |
| Solyc12g009100.1.1 | Tomato | plasma membrane | 59.44 | 60.63 |
| AT2G06005.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 60.0 | 60.0 |
| AT5G20580.2 | Thale cress | cytosol, peroxisome, vacuole | 58.03 | 59.2 |
| Bra006566.1-P | Field mustard | cytosol, nucleus, peroxisome | 57.18 | 58.17 |
| CDY51843 | Canola | cytosol, peroxisome, plasma membrane | 56.9 | 57.88 |
| CDX70932 | Canola | cytosol, mitochondrion, peroxisome | 56.9 | 57.88 |
| PGSC0003DMT400048982 | Potato | cytosol | 9.58 | 57.63 |
| Bra015180.1-P | Field mustard | plasma membrane | 59.15 | 57.07 |
| CDY64735 | Canola | cytosol, nucleus, plasma membrane | 58.59 | 38.45 |
| CDY33404 | Canola | plasma membrane | 58.59 | 38.45 |
| Solyc07g041890.1.1 | Tomato | nucleus | 21.13 | 29.76 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G317300.1 | EnsemblPlantsGene:TraesCS6D01G317300 | InterPro:TMEM192 | ncoils:Coil | PANTHER:PTHR31592 | PFAM:PF14802 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6D:+:426075700..426081110
Molecular Weight (calculated)
40641.4 Da
IEP (calculated)
7.373
GRAVY (calculated)
-0.073
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MPHERGGAPP AVPAPAPEED ALFIDLLHEA PLSGHREPRS IVSGTLYCIL LVGYAAVCVS APWIFLRVPG MIPPLLCSSN VILLLLTGIF QQYWVHQVRK
101: VRLQGYYDFS QKLKHIARLP FATIAYGTAL MLLLIIWQPF VHILSISLLL RIAIVVEATF AGCFMSLYIW YIHKYNSLDG RPDILQSLYS ALQPSTTTLE
201: DRRYYDGRLS DQQMALLQYQ RENIHYLSEE VLRLQECLSK YQRTDVGNTP QVDLVHLLAS RDQELRALSA EMNQVHSELQ LARGLIDEKD SEIQRIRLSN
301: SQYVEENDRL RAILGEWSSR AAKLERALEA ERLSNIELRK NIAKFRGQLH KEQHV
101: VRLQGYYDFS QKLKHIARLP FATIAYGTAL MLLLIIWQPF VHILSISLLL RIAIVVEATF AGCFMSLYIW YIHKYNSLDG RPDILQSLYS ALQPSTTTLE
201: DRRYYDGRLS DQQMALLQYQ RENIHYLSEE VLRLQECLSK YQRTDVGNTP QVDLVHLLAS RDQELRALSA EMNQVHSELQ LARGLIDEKD SEIQRIRLSN
301: SQYVEENDRL RAILGEWSSR AAKLERALEA ERLSNIELRK NIAKFRGQLH KEQHV
001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP
Arabidopsis Description
FIP1Protein FIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8K9]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.