Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EER93089 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G06005.1 | EER93089 | AT4G00650.1 | 19429606 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018275_P001 | Maize | peroxisome | 96.89 | 90.5 |
| TraesCS6B01G367400.1 | Wheat | plasma membrane | 83.62 | 83.85 |
| Os02t0778300-01 | Rice | plasma membrane | 84.18 | 83.71 |
| TraesCS6A01G336900.1 | Wheat | plasma membrane | 83.05 | 83.52 |
| TraesCS6D01G317300.1 | Wheat | plasma membrane | 83.05 | 82.82 |
| HORVU6Hr1G081380.8 | Barley | plasma membrane | 79.1 | 71.79 |
| GSMUA_Achr8P22670_001 | Banana | plasma membrane | 31.36 | 65.29 |
| PGSC0003DMT400048982 | Potato | cytosol | 10.73 | 64.41 |
| KRH12539 | Soybean | endoplasmic reticulum, peroxisome, plastid | 63.28 | 62.92 |
| Solyc12g009100.1.1 | Tomato | plasma membrane | 61.58 | 62.64 |
| KRH37493 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 62.43 | 62.08 |
| VIT_11s0016g01110.t01 | Wine grape | plasma membrane | 60.45 | 60.62 |
| AT5G20580.2 | Thale cress | cytosol, peroxisome, vacuole | 58.47 | 59.48 |
| Bra006566.1-P | Field mustard | cytosol, nucleus, peroxisome | 57.91 | 58.74 |
| CDY51843 | Canola | cytosol, peroxisome, plasma membrane | 57.63 | 58.45 |
| CDX70932 | Canola | cytosol, mitochondrion, peroxisome | 57.63 | 58.45 |
| AT2G06005.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 58.47 | 58.31 |
| Bra015180.1-P | Field mustard | plasma membrane | 57.63 | 55.43 |
| CDY64735 | Canola | cytosol, nucleus, plasma membrane | 57.34 | 37.52 |
| CDY33404 | Canola | plasma membrane | 57.06 | 37.34 |
| Solyc07g041890.1.1 | Tomato | nucleus | 21.47 | 30.16 |
Protein Annotations
| EnsemblPlants:EES05887 | EnsemblPlantsGene:SORBI_3004G318000 | EntrezGene:8082675 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM192 | ncoils:Coil | PANTHER:PTHR31592 | PFAM:PF14802 | ProteinID:EES05887 | ProteinID:EES05887.1 |
| RefSeq:XP_002452911.1 | SEG:seg | TMHMM:TMhelix | unigene:Sbi.6688 | UniParc:UPI0001A85A41 | UniProt:C5XTL5 |
| MapMan:35.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:65368634..65374788
Molecular Weight (calculated)
40180.8 Da
IEP (calculated)
7.125
GRAVY (calculated)
-0.040
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHERGAAAS THAAAPTSEE DALFIDLLHE APLSGHREPR SIVGGTLYCI LLVGFAAVAI SAPWIFLFAP DMISPLLCSS NAILLVLTGI FQQYWVHQVR
101: KVRLQGYYDF SQKLKRIARL PFATIACGTA LMLLIMVWQP LLKILSVSLL LRIAIVVEVT CAGCFMGLYI WHIHKYNSLD GQPDILRSLY SALQPSCTLE
201: DRRYHDARLS DQQMALLQYQ RENIHYLSEE VLRLQECLSK YQRTAGTTPQ VDLAHLLATR DQELRALTAE MDQVHSELQL ARGLIDEKDS EIQRIRLSNN
301: QYVEENDRLR AILGEWSARA AKLERALEAE RASNIELRKN IAKFRGHLYK EQEA
101: KVRLQGYYDF SQKLKRIARL PFATIACGTA LMLLIMVWQP LLKILSVSLL LRIAIVVEVT CAGCFMGLYI WHIHKYNSLD GQPDILRSLY SALQPSCTLE
201: DRRYHDARLS DQQMALLQYQ RENIHYLSEE VLRLQECLSK YQRTAGTTPQ VDLAHLLATR DQELRALTAE MDQVHSELQL ARGLIDEKDS EIQRIRLSNN
301: QYVEENDRLR AILGEWSARA AKLERALEAE RASNIELRKN IAKFRGHLYK EQEA
001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP
Arabidopsis Description
FIP1Protein FIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8K9]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.