Factsheet for Zm00001d020008_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007835_P002
Zm00001d018911_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	Zm00001d007835_P002	AT3G22440.1	15714319
AT2G04400.1	Zm00001d018911_P001	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89210	Sorghum	plastid	81.75	78.91
TraesCS5A01G169500.1	Wheat	plastid	68.64	70.82
TraesCS5D01G173900.1	Wheat	plastid	68.38	70.56
TraesCS5B01G166300.1	Wheat	plastid	68.12	70.29
HORVU5Hr1G052150.3	Barley	plastid	67.61	69.76
Os09t0255400-02	Rice	plastid	64.01	64.68
Zm00001d024393_P001	Maize	plastid	62.21	63.19
GSMUA_Achr3P12080_001	Banana	plastid	59.38	58.93
VIT_12s0057g01240.t01	Wine grape	cytosol	53.98	57.85
KRH14867	Soybean	nucleus, plastid	52.96	52.55
KRH73214	Soybean	nucleus, plastid	52.7	52.16
AT5G48220.1	Thale cress	plastid	50.64	51.98
Bra037502.1-P	Field mustard	plastid	50.64	51.57
Solyc03g111850.2.1	Tomato	plastid	53.47	50.61
Zm00001d025652_P005	Maize	mitochondrion, plastid	54.24	50.6
PGSC0003DMT400039190	Potato	plastid	52.96	50.12
AT2G04400.1	Thale cress	plastid	51.16	49.5
Bra013209.1-P	Field mustard	plastid	50.13	48.51
CDY15081	Canola	plastid	49.61	48.13
CDY66247	Canola	plastid	49.61	48.01
CDY00860	Canola	cytosol	10.03	41.05
CDX86321	Canola	plastid	51.16	39.88
CDX85318	Canola	plastid	50.9	38.08
CDY43301	Canola	plastid	28.02	37.46
CDX94822	Canola	plastid	14.91	33.33
CDY17450	Canola	plastid	26.48	27.84

Protein Annotations

KEGG:00400+4.1.1.48	EntrezGene:100382674	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	InterPro:Aldolase_TIM	EMBL:BT065027
UniProt:C0P9Q8	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0006568	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	HAMAP:MF_00134_B
ProteinID:ONM54080.1	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF14	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	UniParc:UPI000194B256	EnsemblPlantsGene:Zm00001d020008	EnsemblPlants:Zm00001d020008_P001	EnsemblPlants:Zm00001d020008_T001	SEG:seg

Description

Indole-3-glycerol phosphate synthase chloroplastic

Coordinates

chr7:-:85218743..85225143

Molecular Weight (calculated)

42430.2 Da

IEP (calculated)

8.079

GRAVY (calculated)

-0.045

Length

389 amino acids

Sequence
(BLAST)

001: MESSMSMSAA ASVVVRTCVP AAVMLPLSPS FTRPAPRTTG RGFRCRCSST SSATKDSAVV YSRLLDDALF RSAEVIQWES GKSMNAIATA QGIQIRRRCR
101: PRYPSEGTGA ERAVPRNILE QIIWDKEVEV AQRKARTPLC EVKASAALAP PPRDFVGALR AACRRNAVPA LVAEVKKASP SKGLLRDHFD PVEIARTYEK
201: NGAACLSILT DEKHFQGSFE NLEAVRSSGV NCPLLCKEFV IDAWQIYYAR SKGADAVLLI AAVLPDIDIT YFLRVCKSLG MTALVEVHDE RELDRVLKID
301: GVELIGINNR SLGTFEVDTA NTNMLLEKRG DIINEKRIQV VSESGLFTPD DVAYVQKAGV FAVLVGESLL TQEDPGRAIA GLFGKELLP

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.