CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49257	Canola	plastid	95.37	88.79
Bra007422.1-P	Field mustard	plastid	94.44	87.93
CDX89007	Canola	plastid	80.56	75.0
CDY00592	Canola	plastid	80.56	75.0
AT3G58850.1	Thale cress	plastid	78.7	72.03
CDX83516	Canola	plastid	62.04	57.76
CDY68147	Canola	plastid	62.04	57.76
CDY14860	Canola	plastid	61.11	56.9
CDY50830	Canola	plastid	61.11	56.9
CDY42818	Canola	plastid	60.19	55.56
Solyc07g056360.1.1	Tomato	nucleus	41.67	43.27
PGSC0003DMT400044708	Potato	cytosol	40.74	40.37
KRH73670	Soybean	plastid	39.81	33.33
KRH14475	Soybean	nucleus	38.89	30.22
VIT_12s0142g00160.t01	Wine grape	mitochondrion	38.89	27.81

Protein Annotations

EnsemblPlants:CDX71918	EnsemblPlantsGene:GSBRNA2T00155663001	PANTHER:PTHR33124	PANTHER:PTHR33124:SF3	ProteinID:CDX71918	ProteinID:CDX71918.1
SEG:seg	UniParc:UPI0004EB5342	MapMan:15.5.32	:	:	:

Description

BnaC08g29560D

Coordinates

chrLK031795:+:1279559..1279931

Molecular Weight (calculated)

11922.8 Da

IEP (calculated)

4.253

GRAVY (calculated)

-0.509

Length

108 amino acids

Sequence
(BLAST)

001: MEKTLATSHT KRSSPSPSTT VTARPDGFTR RTRQRLSNAT TSVSESDVED DDDEEAVEEK IETLQTIVPG GTALEVDELF EETASYILAL QCQIKAIKVL
101: TAFLERCD

Best Arabidopsis Sequence Match ( AT3G58850.1 )
(BLAST)

001: MEKTLATSHT KRSSPPSPSS AVNTSSTGFN RRTRQRLSDA TASVSETDVE DEDEDEEGVE EKIEALQTIV PGGTELGVDA LFEETASYIL ALQCQINAIK
101: VLTTFLERCE KKDMKFGG

Arabidopsis Description

PAR2Transcription factor PAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.