Factsheet for Bra000276.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000317.1-P
Bra000979.1-P
Bra004879.1-P
Bra010667.1-P
Bra011841.1-P
Bra012133.1-P
Bra023825.1-P
Bra030002.1-P
Bra036071.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42870.1	Bra000317.1-P	AT2G43650.1	21798944
AT2G42870.1	Bra004879.1-P	AT2G44950.1	21798944
AT2G42870.1	Bra040332.1-P	AT2G44950.1	21798944
AT2G42870.1	Bra023825.1-P	AT3G22440.1	21798944
AT2G42870.1	Bra030002.1-P	AT3G50330.1	21798944
AT2G42870.1	Bra036071.1-P	AT3G50330.1	21798944
AT2G42870.1	Bra000979.1-P	AT4G00120.1	21798944
AT2G42870.1	Bra010667.1-P	AT4G39690.1	21798944
AT2G42870.1	Bra011841.1-P	AT4G39690.1	21798944
AT2G42870.1	Bra012133.1-P	AT5G67110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83516	Canola	plastid	100.0	100.0
Bra016854.1-P	Field mustard	plastid	91.38	91.38
Bra004712.1-P	Field mustard	plastid	89.66	89.66
AT2G42870.1	Thale cress	plastid	79.31	77.97
Bra014551.1-P	Field mustard	plastid	66.38	66.38
Bra007422.1-P	Field mustard	plastid	61.21	61.21
Solyc07g056360.1.1	Tomato	nucleus	43.97	49.04
PGSC0003DMT400044708	Potato	cytosol	42.24	44.95
KRH73670	Soybean	plastid	40.52	36.43
KRH14475	Soybean	nucleus	42.24	35.25
VIT_12s0142g00160.t01	Wine grape	mitochondrion	36.21	27.81

Protein Annotations

EnsemblPlants:Bra000276.1	EnsemblPlants:Bra000276.1-P	EnsemblPlantsGene:Bra000276	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	PANTHER:PTHR33124	PANTHER:PTHR33124:SF3	SEG:seg	UniParc:UPI000253FCCD	UniProt:M4C7U8
MapMan:15.5.32	:	:	:	:	:

Description

AT2G42870 (E=2e-035) PAR1, HLH1 | PAR1 (PHY RAPIDLY REGULATED 1)

Coordinates

chrA03:-:10289821..10290171

Molecular Weight (calculated)

12784.3 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.388

Length

116 amino acids

Sequence
(BLAST)

001: MEKTLATSDN TRSISVLPSA AVKSRAAGFE RRTKRRLSQT KASVCVSGEE EDDEEEVKEK IEALQRIIPG GTALGVDALF EETAGYIMSL QCQIKTIKVL
101: TSFIQRLDKQ DMKFGG

Best Arabidopsis Sequence Match ( AT2G42870.1 )
(BLAST)

001: MEETLATPDA TRRSLSPSCS ATVKSRAAGF ERRTKRRLSE TNASVREDRE EAEEEEDEVK EKIEALQRII PGGAALGVDA LFEETAGYIL SLQCQIKTIK
101: VLTSFLQRID QEDMKFGG

Arabidopsis Description

PAR1Transcription factor PAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.