Factsheet for Solyc04g063380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	90.11	96.19
CDX88336	Canola	cytosol	65.66	73.77
KRH64574	Soybean	cytosol	64.29	72.9
CDX87549	Canola	cytosol	70.33	72.11
Bra015699.1-P	Field mustard	cytosol	70.05	72.03
Bra016422.1-P	Field mustard	cytosol	69.78	71.95
AT1G21410.1	Thale cress	cytosol	69.78	70.56
CDX96592	Canola	cytosol	70.05	70.44
Bra003692.1-P	Field mustard	cytosol	69.23	70.19
CDY67973	Canola	plasma membrane	69.78	70.17
CDX68067	Canola	cytosol	68.96	69.92
CDX79184	Canola	cytosol	68.96	69.92
AT1G77000.1	Thale cress	cytosol	68.13	68.89
KRH15905	Soybean	cytosol	70.05	68.73
KRH18090	Soybean	cytosol	70.6	68.53
KRH53355	Soybean	cytosol	69.23	67.74
Zm00001d038224_P004	Maize	cytosol	67.86	67.12
EES18256	Sorghum	cytosol, nucleus, plastid	67.58	66.67
GSMUA_Achr10P...	Banana	cytosol	64.56	66.2
GSMUA_AchrUn_...	Banana	cytosol	66.76	66.03
TraesCS1A01G264900.1	Wheat	cytosol	65.93	64.86
TraesCS1D01G265100.1	Wheat	cytosol	65.38	64.32
GSMUA_Achr6P18620_001	Banana	cytosol	64.56	64.03
VIT_18s0001g15010.t01	Wine grape	mitochondrion	74.73	63.55
Os05t0425700-01	Rice	cytosol	65.38	63.3
TraesCS1B01G275600.1	Wheat	cytosol	65.66	63.06
HORVU1Hr1G065030.2	Barley	cytosol	65.66	63.06
CDY58589	Canola	extracellular	22.53	62.6
Os01t0881900-01	Rice	cytosol	64.84	62.27
TraesCS3D01G402900.2	Wheat	cytosol	64.84	62.11
TraesCS3A01G407700.1	Wheat	cytosol	64.84	62.11
TraesCS3B01G440600.2	Wheat	cytosol	64.84	61.94
EES03986	Sorghum	cytosol	64.01	61.15
CDY58588	Canola	extracellular	21.98	60.61
HORVU3Hr1G091200.4	Barley	cytosol	64.29	55.71
Zm00001d000224_P001	Maize	cytosol	64.84	54.5
Solyc06g005380.2.1	Tomato	cytosol	16.48	17.34
Solyc06g030620.1.1	Tomato	cytosol	9.34	16.92
Solyc04g008980.2.1	Tomato	cytosol	19.23	16.67
Solyc06g007680.1.1	Tomato	cytosol	15.66	14.25
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	24.18	13.73
Solyc12g009560.1.1	Tomato	cytosol	23.9	13.66
Solyc08g060810.2.1	Tomato	plastid	24.73	13.53
Solyc06g054440.2.1	Tomato	mitochondrion	19.78	13.46
Solyc02g092990.1.1	Tomato	plastid	19.78	13.09
Solyc06g049010.1.1	Tomato	plastid	21.43	12.58
Solyc06g030610.1.1	Tomato	cytosol	9.34	12.41
Solyc03g044220.1.1	Tomato	cytosol	18.41	12.2
Solyc04g078490.1.1	Tomato	cytosol	17.86	12.17
Solyc10g076290.1.1	Tomato	cytosol	22.53	12.15
Solyc01g099970.2.1	Tomato	extracellular	20.6	12.12

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	UniProt:K4BT28
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44673
PANTHER:PTHR44673:SF1	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc04g063380.2	EnsemblPlants:Solyc04g063380.2.1
UniParc:UPI0002766239	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:55515476..55518863

Molecular Weight (calculated)

40155.0 Da

IEP (calculated)

7.750

GRAVY (calculated)

0.057

Length

364 amino acids

Sequence
(BLAST)

001: MIGVEDLSLD KLFVNNGSRG GVCKMGGGAM IREWKDIPME LLLRIASLVD DRSVILASCV CSGWRDAISW GLTRLSLSWC KRNMNNLVLT LAPKFTKLQV
101: LTLRQDLPQL EDVGIETIAN HCHELQDLDL SKSFKLTDRS LYALAHGCPN LTKLNISGCS AFSDNAVAYL AERCRNLRVL NLCGCVKAAT DQALKAIGYY
201: CNRLQTVNLG WCDKVGDEGV MSLAYGCPDL RALDLCGCVL ITDETVIALA NNCPHLRSLG LYFCQYITDR AMYSLAQSRV KNKHEMWASM KKHRNEDEGL
301: MNLNISQCTA LTPPAVQAVC EAFPALHTCP ERHSLIISGC LNLTSVHCAC SVQAHRARVL HPAH

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.