Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G264900.1 | Wheat | cytosol | 94.46 | 96.76 |
| TraesCS1D01G265100.1 | Wheat | cytosol | 93.93 | 96.22 |
| TraesCS1B01G275600.1 | Wheat | cytosol | 95.78 | 95.78 |
| Os05t0425700-01 | Rice | cytosol | 82.59 | 83.24 |
| Zm00001d038224_P004 | Maize | cytosol | 79.95 | 82.34 |
| EES18256 | Sorghum | cytosol, nucleus, plastid | 79.95 | 82.11 |
| GSMUA_Achr10P... | Banana | cytosol | 66.49 | 70.99 |
| PGSC0003DMT400063955 | Potato | cytosol, extracellular, nucleus | 62.8 | 69.79 |
| HORVU3Hr1G091200.4 | Barley | cytosol | 75.99 | 68.57 |
| GSMUA_Achr6P18620_001 | Banana | cytosol | 65.44 | 67.57 |
| KRH64574 | Soybean | cytosol | 56.73 | 66.98 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.12 | 66.03 |
| Solyc04g063380.2.1 | Tomato | cytosol | 63.06 | 65.66 |
| AT1G21410.1 | Thale cress | cytosol | 62.27 | 65.56 |
| Bra016422.1-P | Field mustard | cytosol | 60.95 | 65.44 |
| CDX88336 | Canola | cytosol | 55.94 | 65.43 |
| CDX96592 | Canola | cytosol | 61.21 | 64.09 |
| CDX87549 | Canola | cytosol | 59.89 | 63.94 |
| Bra015699.1-P | Field mustard | cytosol | 59.63 | 63.84 |
| CDY67973 | Canola | plasma membrane | 60.95 | 63.81 |
| CDX79184 | Canola | cytosol | 59.37 | 62.67 |
| Bra003692.1-P | Field mustard | cytosol | 59.37 | 62.67 |
| KRH53355 | Soybean | cytosol | 61.48 | 62.63 |
| CDX68067 | Canola | cytosol | 59.1 | 62.4 |
| KRH15905 | Soybean | cytosol | 60.69 | 61.99 |
| AT1G77000.1 | Thale cress | cytosol | 58.84 | 61.94 |
| KRH18090 | Soybean | cytosol | 60.95 | 61.6 |
| CDY58589 | Canola | extracellular | 21.11 | 61.07 |
| VIT_18s0001g15010.t01 | Wine grape | mitochondrion | 67.02 | 59.35 |
| CDY58588 | Canola | extracellular | 20.58 | 59.09 |
| HORVU6Hr1G059950.1 | Barley | cytosol | 19.53 | 17.75 |
| HORVU1Hr1G089690.1 | Barley | cytosol, extracellular, mitochondrion | 11.87 | 16.92 |
| HORVU3Hr1G012530.12 | Barley | cytosol | 15.04 | 16.24 |
| HORVU4Hr1G014630.1 | Barley | cytosol | 16.36 | 16.06 |
| HORVU7Hr1G090240.1 | Barley | cytosol | 18.73 | 13.17 |
| HORVU5Hr1G050420.1 | Barley | plastid | 18.47 | 12.68 |
| HORVU5Hr1G000950.4 | Barley | plastid | 14.78 | 12.53 |
| HORVU5Hr1G029670.1 | Barley | mitochondrion | 16.62 | 12.28 |
| HORVU0Hr1G005070.1 | Barley | plastid | 17.94 | 12.19 |
| HORVU6Hr1G038430.3 | Barley | plastid | 20.58 | 11.94 |
| HORVU5Hr1G047420.2 | Barley | cytosol, mitochondrion, plastid | 20.84 | 11.7 |
| HORVU5Hr1G024060.1 | Barley | cytosol, plastid | 22.43 | 10.08 |
Protein Annotations
| EMBL:AK354704 | EMBL:AK358197 | EnsemblPlants:HORVU1Hr1G065030.2 | EnsemblPlantsGene:HORVU1Hr1G065030 | Gene3D:3.80.10.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR44673 | PANTHER:PTHR44673:SF2 | PFAM:PF13516 | SEG:seg | SMART:SM00367 |
| SUPFAM:SSF52047 | UniParc:UPI0002004E01 | UniProt:F2CSV2 | MapMan:19.2.2.8.1.4.1 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CSV2]
Coordinates
chrchr1H:-:465553991..465557977
Molecular Weight (calculated)
40631.8 Da
IEP (calculated)
7.591
GRAVY (calculated)
0.055
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSARSVHRE LDACFSNLLV SSGGGRGQAE IGGAMPMLSG WKDLPMELLM RIVSVAGDDR TVVVASGVCT GWRDALGWGV TNLSLSWCQQ NMNNLTISVA
101: HKFTKLQVLT LRQIKPQLED SAVEAVANYC YDLRELDLSR SFRLSDRSLY ALANGCPRLT KLNISGCSSF SDSALIYLSC HCKNLKSLNL CGCGKAATDE
201: SLQAIAQNCG HLQSLNLGWC DNVTDEGVTS LASGCPDLRA LDLCGCVLIT DESVIALASG CLHLRSLGLY YCQNITDRAM YSLANSCVKS KRGRWGTMRS
301: SSSSSKDVDG LANLNISQCT ALTPPAVQAV CDSFPSLHTC PDRHSLIISG CLSLTNVHCA CGLQRHRAGS AMQATSHAY
101: HKFTKLQVLT LRQIKPQLED SAVEAVANYC YDLRELDLSR SFRLSDRSLY ALANGCPRLT KLNISGCSSF SDSALIYLSC HCKNLKSLNL CGCGKAATDE
201: SLQAIAQNCG HLQSLNLGWC DNVTDEGVTS LASGCPDLRA LDLCGCVLIT DESVIALASG CLHLRSLGLY YCQNITDRAM YSLANSCVKS KRGRWGTMRS
301: SSSSSKDVDG LANLNISQCT ALTPPAVQAV CDSFPSLHTC PDRHSLIISG CLSLTNVHCA CGLQRHRAGS AMQATSHAY
001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
Arabidopsis Description
SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.