CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68067	Canola	cytosol	96.94	96.94
CDX88336	Canola	cytosol	86.07	95.37
CDX87549	Canola	cytosol	92.76	93.8
AT1G77000.1	Thale cress	cytosol	90.81	90.56
CDX96592	Canola	cytosol	83.84	83.15
CDY67973	Canola	plasma membrane	82.73	82.04
KRH64574	Soybean	cytosol	68.52	76.64
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	69.64	73.31
CDY58589	Canola	extracellular	25.91	70.99
KRH15905	Soybean	cytosol	73.26	70.89
KRH53355	Soybean	cytosol	73.26	70.7
KRH18090	Soybean	cytosol	73.82	70.67
Solyc04g063380.2.1	Tomato	cytosol	69.92	68.96
CDY58588	Canola	extracellular	25.35	68.94
GSMUA_Achr10P...	Banana	cytosol	62.12	62.82
GSMUA_Achr6P18620_001	Banana	cytosol	64.07	62.67
Zm00001d038224_P004	Maize	cytosol	63.79	62.23
VIT_18s0001g15010.t01	Wine grape	mitochondrion	73.26	61.45
GSMUA_AchrUn_...	Banana	cytosol	62.95	61.41
EES18256	Sorghum	cytosol, nucleus, plastid	62.95	61.25
Os05t0425700-01	Rice	cytosol	62.95	60.11
TraesCS1A01G264900.1	Wheat	cytosol	61.84	60.0
TraesCS1D01G265100.1	Wheat	cytosol	61.56	59.73
HORVU1Hr1G065030.2	Barley	cytosol	62.67	59.37
Os01t0881900-01	Rice	cytosol	62.4	59.1
TraesCS1B01G275600.1	Wheat	cytosol	62.12	58.84
TraesCS3A01G407700.1	Wheat	cytosol	61.84	58.42
TraesCS3D01G402900.2	Wheat	cytosol	61.84	58.42
TraesCS3B01G440600.2	Wheat	cytosol	61.56	58.01
EES03986	Sorghum	cytosol	60.45	56.96
HORVU3Hr1G091200.4	Barley	cytosol	61.56	52.62
Zm00001d000224_P001	Maize	cytosol	60.72	50.35
CDX88014	Canola	cytosol	21.73	19.26
CDY06032	Canola	cytosol	18.11	18.41
CDX71945	Canola	cytosol	18.11	18.41
CDY40798	Canola	cytosol	20.89	18.25
CDY46953	Canola	cytosol	20.61	18.0
CDX87090	Canola	cytosol	24.23	14.12
CDY19807	Canola	cytosol	24.23	14.12
CDX76980	Canola	cytosol	22.84	13.69
CDY28039	Canola	cytosol	14.76	13.59
CDX88173	Canola	cytosol	23.4	13.5
CDY35358	Canola	cytosol	23.4	13.48
CDY35942	Canola	cytosol	14.76	13.42
CDY45764	Canola	cytosol, peroxisome, plastid	21.45	13.21
CDX80503	Canola	cytosol	22.84	13.2
CDX80753	Canola	endoplasmic reticulum	24.79	13.17
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	24.51	13.02
CDY09760	Canola	cytosol	22.28	12.76
CDX90588	Canola	cytosol	22.28	12.72
CDY19741	Canola	cytosol	21.45	12.48
CDY53337	Canola	cytosol	21.45	12.05
CDX80608	Canola	cytosol	20.89	11.72
CDX88253	Canola	cytosol	20.89	11.72
CDY43846	Canola	plastid	16.71	11.67
CDX83114	Canola	cytosol	16.16	11.67
CDX81326	Canola	cytosol	16.99	11.64
CDY18646	Canola	cytosol	16.99	11.64
CDX68575	Canola	cytosol	16.43	11.55
CDY25663	Canola	plastid	16.43	11.48
CDY29091	Canola	plastid	4.46	9.25
CDY12824	Canola	nucleus	17.27	5.69
CDY01426	Canola	cytosol	16.99	5.63

Protein Annotations

MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EnsemblPlants:CDX79184	ProteinID:CDX79184	ProteinID:CDX79184.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00131754001	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646
PFAM:PF13516	PANTHER:PTHR44673	PANTHER:PTHR44673:SF1	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EEC58E	SEG:seg	:	:	:	:

Description

BnaC06g21190D

Coordinates

chrLK031817:+:69771..71911

Molecular Weight (calculated)

39536.9 Da

IEP (calculated)

6.996

GRAVY (calculated)

0.037

Length

359 amino acids

Sequence
(BLAST)

001: MVSEEGSATL DRCFEKMKME GIVISEWKDI PVELLMKILN LVDDRTVIIA SGVCSGWRDA ISFGLTRLSL SWCKKNLNSL VLSLAPKLVK LQTLVLRQDN
101: PQLEDNAVEA IANHCHELQD LDLSKSLKLT DHSIYSLARG CTNLTKLNLS GCTSFSDTAL AYLTRFCRKL KVLNLCGCVE AVSDNALQAI GENCNEMQSL
201: NLGWCENISD DGVMSLAYGC PDLRTLDLCG CVLITDESVV ALANKCVHLR SLGLYYCRNI TDRAMYSLAQ SGVKNKNEMW RSVKKGKFDE EGLRSLNISQ
301: CTYLTPSAVQ AVCDTFPALH TCSGRHSLVM SGCLNLTSVH CACILQAHRT HTALPHPAH

Best Arabidopsis Sequence Match ( AT1G77000.2 )
(BLAST)

001: MVSEGATRKE LNLCFENMKM EGVLISEWKD IPVELLMKIL NLVDDRTVII ASCICSGWRD AVSLGLTRLS LSWCKKNMNS LVLSLAPKFV KLQTLVLRQD
101: KPQLEDNAVE AIANHCHELQ DLDLSKSSKI TDHSLYSLAR GCTNLTKLNL SGCTSFSDTA LAHLTRFCRK LKILNLCGCV EAVSDNTLQA IGENCNQLQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC SCVLITDESV VALANRCIHL RSLGLYYCRN ITDRAMYSLA QSGVKNKHEM WRAVKKGKFD EEGLRSLNIS
301: QCTYLTPSAV QAVCDTFPAL HTCSGRHSLV MSGCLNLQSV HCACILQAHR THTVYPHPAH

Arabidopsis Description

SKP2BF-box protein SKP2B [Source:UniProtKB/Swiss-Prot;Acc:O49286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.