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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G23340.1 CDX68112 AT1G75950.1 21798944
AT5G23340.1 CDX73212 AT1G75950.1 21798944
AT5G23340.1 CDX80590 AT1G75950.1 21798944
AT5G23340.1 CDX85931 AT1G75950.1 21798944
AT5G23340.1 CDX87650 AT1G75950.1 21798944
AT5G23340.1 CDY13521 AT1G75950.1 21798944
AT5G23340.1 CDY39073 AT1G75950.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY46953 Canola cytosol 95.62 95.62
Bra029367.1-P Field mustard cytosol 95.13 95.13
AT5G23340.1 Thale cress cytosol 89.54 90.86
CDX88014 Canola cytosol 88.56 89.88
VIT_10s0071g00310.t01 Wine grape cytosol 71.53 71.19
PGSC0003DMT400029999 Potato cytosol 68.37 67.22
Solyc04g008980.2.1 Tomato cytosol 67.88 66.43
KRG90608 Soybean cytosol 66.42 65.31
KRH36149 Soybean cytosol 65.69 64.44
CDY45764 Canola cytosol, peroxisome, plastid 88.08 62.09
GSMUA_Achr8P13910_001 Banana mitochondrion 50.37 58.47
GSMUA_Achr5P19410_001 Banana cytosol 59.12 57.18
TraesCS6B01G262900.1 Wheat cytosol 57.18 56.35
TraesCS6D01G216400.1 Wheat cytosol 57.18 56.35
TraesCS6A01G234100.2 Wheat cytosol 56.93 56.12
HORVU6Hr1G059950.1 Barley cytosol 56.45 55.64
Os02t0636400-01 Rice cytosol 26.28 54.0
Zm00001d051219_P001 Maize cytosol 54.5 53.72
KXG30697 Sorghum cytosol 52.8 51.42
KRH16153 Soybean cytosol 29.93 49.6
CDY29091 Canola plastid 19.46 46.24
CDY58589 Canola extracellular 7.54 23.66
CDY58588 Canola extracellular 7.3 22.73
CDX88336 Canola cytosol 17.52 22.22
CDX87549 Canola cytosol 18.25 21.13
CDX68067 Canola cytosol 18.25 20.89
CDX79184 Canola cytosol 18.25 20.89
CDX96592 Canola cytosol 17.76 20.17
CDY67973 Canola plasma membrane 17.76 20.17
CDY28039 Canola cytosol 18.98 20.0
CDY35942 Canola cytosol 19.22 20.0
CDX71945 Canola cytosol 16.55 19.26
CDY06032 Canola cytosol 16.3 18.98
CDY09760 Canola cytosol 28.71 18.82
CDX90588 Canola cytosol 28.71 18.76
CDY19741 Canola cytosol 27.25 18.15
CDX83114 Canola cytosol 21.65 17.91
CDY53337 Canola cytosol 27.49 17.68
CDX68575 Canola cytosol 21.9 17.61
CDX88253 Canola cytosol 27.01 17.34
CDX80608 Canola cytosol 26.76 17.19
CDX81326 Canola cytosol 21.65 16.98
CDY25663 Canola plastid 21.17 16.93
CDY11182 Canola cytosol, endoplasmic reticulum, nucleus 27.74 16.86
CDY43846 Canola plastid 20.92 16.73
CDY18646 Canola cytosol 20.92 16.41
CDX80753 Canola endoplasmic reticulum 26.76 16.27
CDX87090 Canola cytosol 24.09 16.07
CDY19807 Canola cytosol 23.84 15.91
CDX80503 Canola cytosol 23.84 15.78
CDX88173 Canola cytosol 23.84 15.76
CDY35358 Canola cytosol 23.11 15.25
CDX76980 Canola cytosol 21.17 14.52
CDY12824 Canola nucleus 21.41 8.07
CDY01426 Canola cytosol 20.92 7.94
Protein Annotations
EnsemblPlants:CDY40798EnsemblPlantsGene:GSBRNA2T00071716001Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001611InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rptInterPro:Leu-rich_rpt_Cys-con_subtypPANTHER:PTHR45191
PFAM:PF13516ProteinID:CDY40798ProteinID:CDY40798.1SMART:SM00367SUPFAM:SSF52047UniParc:UPI0004EE7921
UniProt:A0A078HVI8MapMan:35.1::::
Description
BnaC02g41670DBnaC02g41670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVI8]
Coordinates
chrLK032479:-:68278..71846
Molecular Weight (calculated)
44997.7 Da
IEP (calculated)
7.625
GRAVY (calculated)
0.014
Length
411 amino acids
Sequence
(BLAST)
001: MASVCVNDAL TDDELRCVLS KLDRDKDKEV FSLVCKRWLY LQSTDRKKLA ARAGPHLLGR LALRFTQIVE LDFSQSVSRS FYPGVTDSDL TVIAEGFRCL
101: RVLNLHNCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSSVAEGCH DLRTLHLAGC RLITNESLKS LSERCRDLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKSLDIN KCSNIGDAGV TSVAKACAYS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMLLAHSC RDSLKNLRMD WCLNISDSSL
301: TCILKQCKNL DALDIGCCEE VTDNAFRDLG SGDVMGLKVL KVSNCPRITV KGIGKVLEKC KSLEYLDVRS LPHVTEVRCS EAGLEFPKCC KVNFSGSLTE
401: PDVLLGYSSL P
Best Arabidopsis Sequence Match ( AT5G23340.1 )
(BLAST)
001: MSSVCVNEAL TDDELRWVLS RLDSDKDKEV FGLVCKRWLN LQSTDRKKLA ARAGPHMLRR LASRFTQIVE LDLSQSISRS FYPGVTDSDL AVISEGFKFL
101: RVLNLHNCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSAVAEGCH DLRALHLAGC RFITDESLKS LSERCRDLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKSLDIN KCSNVGDAGV SSVAKACASS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMLLADSC KDSLKNLRMD WCLNISDSSL
301: SCILKQCKNL EALDIGCCEE VTDTAFRDLG SDDVLGLKVL KVSNCTKITV TGIGKLLDKC SSLEYIDVRS LPHVTEVRCS EAGLEFPKCC KVNFSGSLTE
401: PDVLL
Arabidopsis Description
At5g23340/MKD15_20 [Source:UniProtKB/TrEMBL;Acc:Q9FMW7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.